| STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019 | 16089 | 2019 |
| STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015 | 10914 | 2015 |
| The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ... Nucleic acids research, gkw937, 2016 | 7264 | 2016 |
| The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ... Nucleic acids research 49 (D1), D605-D612, 2021 | 6777 | 2021 |
| STRING v9. 1: protein-protein interaction networks, with increased coverage and integration A Franceschini, D Szklarczyk, S Frankild, M Kuhn, M Simonovic, A Roth, ... Nucleic acids research 41 (D1), D808-D815, 2012 | 4950 | 2012 |
| The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored D Szklarczyk, A Franceschini, M Kuhn, M Simonovic, A Roth, P Minguez, ... Nucleic acids research 39 (suppl_1), D561-D568, 2010 | 3965 | 2010 |
| The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ... Nucleic acids research 51 (D1), D638-D646, 2023 | 3677 | 2023 |
| eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019 | 3639 | 2019 |
| Proteome survey reveals modularity of the yeast cell machinery AC Gavin, P Aloy, P Grandi, R Krause, M Boesche, M Marzioch, C Rau, ... Nature 440 (7084), 631-636, 2006 | 3153 | 2006 |
| STRING 8—a global view on proteins and their functional interactions in 630 organisms LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ... Nucleic acids research 37 (suppl_1), D412-D416, 2009 | 2966 | 2009 |
| Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Molecular biology and evolution 34 (8), 2115-2122, 2017 | 2498 | 2017 |
| eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016 | 2069 | 2016 |
| STRING: known and predicted protein–protein associations, integrated and transferred across organisms C Von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, ... Nucleic acids research 33 (suppl_1), D433-D437, 2005 | 2035 | 2005 |
| Mining electronic health records: towards better research applications and clinical care PB Jensen, LJ Jensen, S Brunak Nature Reviews Genetics 13 (6), 395-405, 2012 | 1980 | 2012 |
| Cytoscape StringApp: network analysis and visualization of proteomics data NT Doncheva, JH Morris, J Gorodkin, LJ Jensen Journal of proteome research 18 (2), 623-632, 2018 | 1859 | 2018 |
| Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis JV Olsen, M Vermeulen, A Santamaria, C Kumar, ML Miller, LJ Jensen, ... Science signaling 3 (104), ra3-ra3, 2010 | 1765 | 2010 |
| Protein disorder prediction: implications for structural proteomics R Linding, LJ Jensen, F Diella, P Bork, TJ Gibson, RB Russell Structure 11 (11), 1453-1459, 2003 | 1549 | 2003 |
| The SIDER database of drugs and side effects M Kuhn, I Letunic, LJ Jensen, P Bork Nucleic acids research 44 (D1), D1075-D1079, 2016 | 1510 | 2016 |
| Drug target identification using side-effect similarity M Campillos, M Kuhn, AC Gavin, LJ Jensen, P Bork Science 321 (5886), 263-266, 2008 | 1474 | 2008 |
| STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data D Szklarczyk, A Santos, C Von Mering, LJ Jensen, P Bork, M Kuhn Nucleic acids research 44 (D1), D380-D384, 2016 | 1473 | 2016 |
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
