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Ian Sudbery
Ian Sudbery
Lecturer in Bioinfomatics, University of Sheffield
Verified email at sheffield.ac.uk
Title
Cited by
Cited by
Year
Sequencing depth and coverage: key considerations in genomic analyses
D Sims, I Sudbery, NE Ilott, A Heger, CP Ponting
Nature Reviews Genetics 15 (2), 121-132, 2014
17202014
UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
T Smith, A Heger, I Sudbery
Genome research 27 (3), 491-499, 2017
15132017
KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands
AM Farcas, NP Blackledge, I Sudbery, HK Long, JF McGouran, NR Rose, ...
elife 1, e00205, 2012
4962012
Apoptosis induced by environmental stresses and amphotericin B in Candida albicans
AJ Phillips, I Sudbery, M Ramsdale
Proceedings of the National Academy of Sciences 100 (24), 14327-14332, 2003
4602003
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
A Srivastava, L Malik, T Smith, I Sudbery, R Patro
Genome biology 20, 1-16, 2019
1962019
Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy
P Rajan, IM Sudbery, MEM Villasevil, E Mui, J Fleming, M Davis, I Ahmad, ...
European urology 66 (1), 32-39, 2014
1572014
The m6A-methylase complex recruits TREX and regulates mRNA export
S Lesbirel, N Viphakone, M Parker, J Parker, C Heath, I Sudbery, ...
Scientific Reports 8 (1), 13827, 2018
1182018
Co-transcriptional loading of RNA export factors shapes the human transcriptome
N Viphakone, I Sudbery, L Griffith, CG Heath, D Sims, SA Wilson
Molecular Cell 75 (2), 310-323. e8, 2019
982019
High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta
C Daelemans, ME Ritchie, G Smits, S Abu-Amero, IM Sudbery, MS Forrest, ...
BMC genetics 11, 1-20, 2010
892010
CGAT: computational genomics analysis toolkit
D Sims, NE Ilott, SN Sansom, IM Sudbery, JS Johnson, KA Fawcett, ...
Bioinformatics 30 (9), 1290-1291, 2014
772014
Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis
I Sudbery, AJ Enright, AG Fraser, I Dunham
BMC genomics 11, 1-12, 2010
652010
Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre-and post-treatment prostatic biopsies from patients with advanced prostate cancer
P Rajan, J Stockley, IM Sudbery, JT Fleming, A Hedley, G Kalna, D Sims, ...
BMC cancer 14, 1-10, 2014
542014
Next-generation sequencing of vertebrate experimental organisms
DJ Turner, TM Keane, I Sudbery, DJ Adams
Mammalian genome 20, 327-338, 2009
532009
UCHL3 regulates topoisomerase-induced chromosomal break repair by controlling TDP1 proteostasis
C Liao, R Beveridge, JJR Hudson, JD Parker, SC Chiang, S Ray, ...
Cell reports 23 (11), 3352-3365, 2018
502018
Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver …
I Sudbery, J Stalker, JT Simpson, T Keane, AG Rust, ME Hurles, K Walter, ...
Genome Biology 10, 1-19, 2009
422009
CGAT-core: a python framework for building scalable, reproducible computational biology workflows
AP Cribbs, S Luna-Valero, C George, IM Sudbery, AJ Berlanga-Taylor, ...
bioRxiv, 581009, 2019
332019
Tribbles-1 expression and its function to control inflammatory cytokines, including interleukin-8 levels are regulated by miRNAs in macrophages and prostate cancer cells
C Niespolo, JM Johnston, SR Deshmukh, S Satam, Z Shologu, ...
Frontiers in Immunology 11, 574046, 2020
312020
Macrophage polarisation associated with atherosclerosis differentially affects their capacity to handle lipids
K Baidžajevas, É Hadadi, B Lee, J Lum, F Shihui, I Sudbery, E Kiss-Tóth, ...
Atherosclerosis 305, 10-18, 2020
292020
Cell Cycle-Independent Phospho-Regulation of Fkh2 during Hyphal Growth Regulates Candida albicans Pathogenesis
JA Greig, IM Sudbery, JP Richardson, JR Naglik, Y Wang, PE Sudbery
PLoS pathogens 11 (1), e1004630, 2015
282015
Phosphoregulation of Nap1 plays a role in septin ring dynamics and morphogenesis in Candida albicans
ZX Huang, P Zhao, GS Zeng, YM Wang, I Sudbery, Y Wang
MBio 5 (1), 10.1128/mbio. 00915-13, 2014
262014
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Articles 1–20