W. Hayes McDonald
W. Hayes McDonald
Research Assistant Professor of Biochemistry, Vanderbilt University
Verified email at
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DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
DL Tabb, WH McDonald, JR Yates
Journal of proteome research 1 (1), 21-26, 2002
Role of Rpn11 Metalloprotease in Deubiquitination and Degradation by the 26S Proteasome
R Verma, L Aravind, R Oania, WH McDonald, JR Yates III, EV Koonin, ...
Science 298 (5593), 611-615, 2002
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
BM Tyler, S Tripathy, X Zhang, P Dehal, RHY Jiang, A Aerts, ...
Science 313 (5791), 1261-1266, 2006
Sirt3-mediated deacetylation of evolutionarily conserved lysine 122 regulates MnSOD activity in response to stress
R Tao, MC Coleman, JD Pennington, O Ozden, SH Park, H Jiang, HS Kim, ...
Molecular cell 40 (6), 893-904, 2010
Shotgun identification of protein modifications from protein complexes and lens tissue
MJ MacCoss, WH McDonald, A Saraf, R Sadygov, JM Clark, JJ Tasto, ...
Proceedings of the National Academy of Sciences 99 (12), 7900-7905, 2002
Mus81-Eme1 are essential components of a Holliday junction resolvase
MN Boddy, PHL Gaillard, WH McDonald, P Shanahan, JR Yates, ...
Cell 107 (4), 537-548, 2001
Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5
RAM De Bruin, WH McDonald, TI Kalashnikova, J Yates, C Wittenberg
Cell 117 (7), 887-898, 2004
Shotgun proteomics and biomarker discovery
WH McDonald, JR Yates Iii
Disease markers 18 (2), 99-105, 2002
MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications
WH McDonald, DL Tabb, RG Sadygov, MJ MacCoss, J Venable, ...
Rapid Communications in Mass Spectrometry 18 (18), 2162-2168, 2004
Comparison of three directly coupled HPLC MS/MS strategies for identification of proteins from complex mixtures: single-dimension LC-MS/MS, 2-phase MudPIT, and 3-phase MudPIT
WH McDonald, R Ohi, DT Miyamoto, TJ Mitchison, JR Yates III
International Journal of Mass Spectrometry 219 (1), 245-251, 2002
Assigning function to yeast proteins by integration of technologies
TR Hazbun, L Malmström, S Anderson, BJ Graczyk, B Fox, M Riffle, ...
Molecular cell 12 (6), 1353-1365, 2003
Tea4p links microtubule plus ends with the formin for3p in the establishment of cell polarity
SG Martin, WH McDonald, JR Yates, F Chang
Developmental cell 8 (4), 479-491, 2005
Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments
F Wisniewski-Dyé, K Borziak, G Khalsa-Moyers, G Alexandre, ...
PLoS genetics 7 (12), e1002430, 2011
Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs
MD Ohi, AJ Link, L Ren, JL Jennings, WH McDonald, KL Gould
Molecular and cellular biology, 2002
Automatic quality assessment of peptide tandem mass spectra
M Bern, D Goldberg, WH McDonald, JR Yates III
Bioinformatics 20 (suppl_1), i49-i54, 2004
Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry
BM Sirbu, WH McDonald, H Dungrawala, A Badu-Nkansah, ...
Journal of Biological Chemistry 288 (44), 31458-31467, 2013
Swi1 and Swi3 are components of a replication fork protection complex in fission yeast
E Noguchi, C Noguchi, WH McDonald, JR Yates III, P Russell
Molecular and cellular biology 24 (19), 8342-8355, 2004
Staphylococcus aureus LukAB cytotoxin kills human neutrophils by targeting the CD11b subunit of the integrin Mac-1
AL DuMont, P Yoong, CJ Day, F Alonzo III, WH McDonald, MP Jennings, ...
Proceedings of the National Academy of Sciences 110 (26), 10794-10799, 2013
Carcinoma and stromal enzyme activity profiles associated with breast tumor growth in vivo
N Jessani, M Humphrey, WH McDonald, S Niessen, K Masuda, ...
Proceedings of the National Academy of Sciences 101 (38), 13756-13761, 2004
Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain
K Flick, I Ouni, JA Wohlschlegel, C Capati, WH McDonald, JR Yates 3rd, ...
Nature cell biology 6 (7), 634-641, 2004
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