Ana Abecasis

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Anne-Mieke VandammeFull professor, KU Leuven, BelgiumVerified email at uzleuven.be
Kristof TheysKU LeuvenVerified email at kuleuven.be
Andrea-Clemencia Pineda-PeñaSanofi: Global Clinical Development Vaccines; IHMT (Portugal); FIDIC (Colombia)Verified email at sanofi.com
Pieter LibinAssistant Professor, Vrije Universiteit BrusselVerified email at vub.be
Nuno R. FariaProfessor, Imperial College London / University of São PauloVerified email at ic.ac.uk
Philippe LemeyFull Professor, KU LeuvenVerified email at kuleuven.be
M Rosario Oliveira MartinsUniversidade NOVA LisboaVerified email at ihmt.unl.pt
Sonia DiasNational School of Public Health, Universidade NOVA LisboaVerified email at ensp.unl.pt
Maurizio ZazziProfessor of Microbiology, University of SienaVerified email at unisi.it
Tulio de OliveiraStellenbosch UniversityVerified email at sun.ac.za
Nuno TaveiraEgas Moniz School of Health & Science and Instituto de Investigação do Medicamento (iMed.Ulisboa)Verified email at ff.ul.pt
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Ines BártoloiMedULisboaVerified email at ff.ulisboa.pt
Jurgen Vercauterenassistant professor, statistician and lecturer at KU Leuven, BELGIUMVerified email at kuleuven.be
Ricardo ParreiraGlobal Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Verified email at ihmt.unl.pt
Nowe AnnGewoon hoogleraarVerified email at vub.be
Miguel ViveirosProfessor of Microbiology, Inst. Higiene Medicina Tropical, Universidade NOVA de Lisboa, PortugalVerified email at ihmt.unl.pt
Marcio Roberto Teixeira NunesResearcher in Public Health, Evandro Chagas Institute, BrazilVerified email at iec.gov.br
Marcelo A. SoaresPesquisador Titular, Instituto Nacional do CâncerVerified email at inca.gov.br
Anna Maria GerettiKing' College LondonVerified email at kcl.ac.uk

Ana Abecasis

Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa

Verified email at ihmt.unl.pt

genomic epidemiology virology global health molecular evolution drug resistance


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Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infection, genetics and evolution 19, 337-348, 2013	407	2013
HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics AB Abecasis, AMJ Wensing, D Paraskevis, J Vercauteren, K Theys, ... Retrovirology 10, 1-13, 2013	186	2013
A genomic signature and the identification of new sporulation genes AB Abecasis, M Serrano, R Alves, L Quintais, JB Pereira-Leal, ... Journal of bacteriology 195 (9), 2101-2115, 2013	144	2013
Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution AB Abecasis, AM Vandamme, P Lemey Journal of virology 83 (24), 12917-12924, 2009	132	2009
Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form AB Abecasis, P Lemey, N Vidal, T de Oliveira, M Peeters, R Camacho, ... Journal of virology 81 (16), 8543-8551, 2007	130	2007
Phylogeography of dengue virus serotype 4, Brazil, 2010–2011 MRT Nunes, NR Faria, HB Vasconcelos, DB de Almeida Medeiros, ... Emerging infectious diseases 18 (11), 1858, 2012	113	2012
Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G AB Abecasis, K Deforche, J Snoeck, LT Bacheler, P McKenna, ... Aids 19 (16), 1799-1806, 2005	104	2005
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes V Fonseca, PJK Libin, K Theys, NR Faria, MRT Nunes, MI Restovic, ... PLoS neglected tropical diseases 13 (5), e0007231, 2019	84	2019
Investigation of baseline susceptibility to protease inhibitors in HIV-1 subtypes C, F, G and CRF02_AG AB Abecasis, K Deforche, LT Bacheler, P McKenna, AP Carvalho, ... Antiviral therapy 11 (5), 581-589, 2006	83	2006
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ... Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020	81	2020
HIV and tuberculosis co-infection among migrants in Europe: A systematic review on the prevalence, incidence and mortality AM Tavares, I Fronteira, I Couto, D Machado, M Viveiros, AB Abecasis, ... PloS one 12 (9), e0185526, 2017	74	2017
Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon NR Faria, MA Suchard, A Abecasis, JD Sousa, N Ndembi, I Bonfim, ... Infection, Genetics and Evolution 12 (2), 453-460, 2012	70	2012
VIRULIGN: fast codon-correct alignment and annotation of viral genomes PJK Libin, K Deforche, AB Abecasis, K Theys Bioinformatics 35 (10), 1763-1765, 2019	66	2019
Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe D Frentz, DAMC Van de Vijver, AB Abecasis, J Albert, O Hamouda, ... BMC Infectious Diseases 14, 1-12, 2014	59	2014
The impact of HIV-1 within-host evolution on transmission dynamics K Theys, P Libin, AC Pineda-Pena, A Nowe, AM Vandamme, AB Abecasis Current opinion in virology 28, 92-101, 2018	56	2018
Patterns of transmitted HIV drug resistance in Europe vary by risk group D Frentz, D van de Vijver, A Abecasis, J Albert, O Hamouda, L Jørgensen, ... PloS one 9 (4), e94495, 2014	53	2014
Limited cross-border infections in patients newly diagnosed with HIV in Europe D Frentz, AMJ Wensing, J Albert, D Paraskevis, AB Abecasis, O Hamouda, ... Retrovirology 10, 1-10, 2013	53	2013
HIV-1 subtype is an independent predictor of reverse transcriptase mutation K65R in HIV-1 patients treated with combination antiretroviral therapy including tenofovir K Theys, J Vercauteren, J Snoeck, M Zazzi, RJ Camacho, C Torti, ... Antimicrobial agents and chemotherapy 57 (2), 1053-1056, 2013	50	2013
Phylogenetic analysis as a forensic tool in HIV transmission investigations AB Abecasis, M Pingarilho, AM Vandamme Aids 32 (5), 543-554, 2018	48	2018
Science in court: the myth of HIV fingerprinting AB Abecasis, AM Geretti, J Albert, L Power, M Weait, AM Vandamme The Lancet Infectious Diseases 11 (2), 78-79, 2011	44	2011

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