Askarbek N Orakov
Askarbek N Orakov
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A faecal microbiota signature with high specificity for pancreatic cancer
E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ...
Gut 71 (7), 1359-1372, 2022
GUNC: detection of chimerism and contamination in prokaryotic genomes
A Orakov, A Fullam, LP Coelho, S Khedkar, D Szklarczyk, DR Mende, ...
Genome biology 22, 1-19, 2021
Towards the biogeography of prokaryotic genes
LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ...
Nature 601 (7892), 252-256, 2022
Drivers and determinants of strain dynamics following fecal microbiota transplantation
TSB Schmidt, SS Li, OM Maistrenko, W Akanni, LP Coelho, S Dolai, ...
Nature medicine 28 (9), 1902-1912, 2022
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ...
Nucleic Acids Research 48 (D1), D621-D625, 2020
Nuclear matrix metalloproteinases: functions resemble the evolution from the intracellular to the extracellular compartment
Y Xie, A Mustafa, A Yerzhan, D Merzhakupova, P Yerlan, A N Orakov, ...
Cell death discovery 3 (1), 1-8, 2017
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
S Khedkar, G Smyshlyaev, I Letunic, OM Maistrenko, LP Coelho, ...
Nucleic acids research 50 (6), 3155-3168, 2022
Analysis of origin and protein-protein interaction maps suggests distinct oncogenic role of nuclear EGFR during cancer evolution
A Sharip, D Abdukhakimova, X Wang, A Kim, Y Kim, A Sharip, A Orakov, ...
Journal of Cancer 8 (5), 903, 2017
ASAR: visual analysis of metagenomes in R
AN Orakov, NK Sakenova, A Sorokin, II Goryanin
Bioinformatics 34 (8), 1404-1405, 2018
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
TSB Schmidt, A Fullam, P Ferretti, A Orakov, OM Maistrenko, ...
Nucleic Acids Research 52 (D1), D777-D783, 2024
ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes
A Orakov, N Sakenova, I Goryanin, A Sorokin
The 11th International Joint Conference on Biomedical Engineering Systems …, 2018
Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics
N Sakenova, E Cacace, A Orakov, F Huber, V Varik, G Kritikos, J Michiels, ...
bioRxiv, 2024.01. 25.576750, 2024
Bioinformatic analysis of bacterial composition and metabolic mapping of selectively enriched microbial community within Microbial Fuel Cells
L Szydlowski, V Fedorovich, I Goryanin, A Orakov, N Sakenova, A Sorokin
2017 International Conference on Intelligent Informatics and Biomedical …, 2017
OS-073 Linking gut microbiome enterotypes and dysbiosis to liver disease severity and prognosis
MI Keller, S Nishijima, D Podlesny, CY Kim, SM Robbani, C Schudoma, ...
Journal of Hepatology 80, S48, 2024
Uncovering nitroxoline activity spectrum, mode of action and resistance across Gram-negative bacteria
E Cacace, M Tietgen, M Steinhauer, A Mateus, TG Schultze, ...
bioRxiv, 2024.06. 04.597298, 2024
A novel computational method to analyse metagenome for understanding of microbial community composition and functional potential
A Orakov, N Sakenova, I Goraynin, A Sorokin
2017 International Conference on Intelligent Informatics and Biomedical …, 2017
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