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Vladimir Gligorijevic
Vladimir Gligorijevic
Prescient Design, Genentech, Research & Early Development (gRED)
Verified email at gene.com - Homepage
Title
Cited by
Cited by
Year
Structure-based protein function prediction using graph convolutional networks
V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ...
Nature communications 12 (1), 3168, 2021
7072021
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
3992019
Methods for biological data integration: perspectives and challenges
V Gligorijević, N Pržulj
Journal of the Royal Society Interface 12 (112), 20150571, 2015
3272015
Integrative methods for analyzing big data in precision medicine
V Gligorijević, N Malod‐Dognin, N Pržulj
Proteomics 16 (5), 741-758, 2016
2262016
deepNF: deep network fusion for protein function prediction
V Gligorijević, M Barot, R Bonneau
Bioinformatics 34 (22), 3873-3881, 2018
2192018
Non-negative matrix factorizations for multiplex network analysis
V Gligorijević, Y Panagakis, S Zafeiriou
IEEE transactions on pattern analysis and machine intelligence 41 (4), 928-940, 2018
982018
Co-evolutionary mechanisms of emotional bursts in online social dynamics and networks
B Tadić, V Gligorijević, M Mitrović, M Šuvakov
Entropy 15 (12), 5084-5120, 2013
682013
Fuse: multiple network alignment via data fusion
V Gligorijević, N Malod-Dognin, N Pržulj
Bioinformatics 32 (8), 1195-1203, 2016
642016
Patient-specific data fusion for cancer stratification and personalised treatment
V Gligorijević, N Malod-Dognin, N Pržulj
Biocomputing 2016: Proceedings of the Pacific Symposium, 321-332, 2016
602016
How the online social networks are used: dialogues-based structure of MySpace
M Šuvakov, M Mitrović, V Gligorijević, B Tadić
Journal of the Royal Society Interface 10 (79), 20120819, 2013
512013
Protein remote homology detection and structural alignment using deep learning
T Hamamsy, JT Morton, R Blackwell, D Berenberg, N Carriero, ...
Nature biotechnology 42 (6), 975-985, 2024
502024
Sequence-structure-function relationships in the microbial protein universe
J Koehler Leman, P Szczerbiak, PD Renfrew, V Gligorijevic, D Berenberg, ...
Nature communications 14 (1), 2351, 2023
432023
Integration of molecular network data reconstructs Gene Ontology
V Gligorijević, V Janjić, N Pržulj
Bioinformatics 30 (17), i594-i600, 2014
432014
Function-guided protein design by deep manifold sampling
V Gligorijević, D Berenberg, S Ra, A Watkins, S Kelow, K Cho, R Bonneau
bioRxiv, 2021.12. 22.473759, 2021
402021
Equifold: Protein structure prediction with a novel coarse-grained structure representation
JH Lee, P Yadollahpour, A Watkins, NC Frey, A Leaver-Fay, S Ra, K Cho, ...
Biorxiv, 2022.10. 07.511322, 2022
352022
AbDiffuser: full-atom generation of in-vitro functioning antibodies
K Martinkus, J Ludwiczak, WC Liang, J Lafrance-Vanasse, I Hotzel, ...
Advances in Neural Information Processing Systems 36, 2024
342024
Structure-based protein function prediction using graph convolutional networks. Nat Commun 12: 3168
V Gligorijevic, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ...
262021
Protein discovery with discrete walk-jump sampling
NC Frey, D Berenberg, K Zadorozhny, J Kleinhenz, J Lafrance-Vanasse, ...
arXiv preprint arXiv:2306.12360, 2023
232023
TCRconv: predicting recognition between T cell receptors and epitopes using contextualized motifs
E Jokinen, A Dumitrescu, J Huuhtanen, V Gligorijević, S Mustjoki, ...
Bioinformatics 39 (1), btac788, 2023
222023
Protein structural alignments from sequence
JT Morton, CEM Strauss, R Blackwell, D Berenberg, V Gligorijevic, ...
BioRxiv, 2020.11. 03.365932, 2020
202020
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