Jan Gorodkin
Jan Gorodkin
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Cited by
Cytoscape StringApp: network analysis and visualization of proteomics data
NT Doncheva, JH Morris, J Gorodkin, LJ Jensen
Journal of proteome research 18 (2), 623-632, 2018
Analyses of pig genomes provide insight into porcine demography and evolution
MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ...
Nature 491 (7424), 393-398, 2012
Comparing two K-category assignments by a K-category correlation coefficient
J Gorodkin
Computational biology and chemistry 28 (5-6), 367-374, 2004
Pigs in sequence space: a 0.66 X coverage pig genome survey based on shotgun sequencing
R Wernersson, MH Schierup, FG Jørgensen, J Gorodkin, F Panitz, ...
BMC genomics 6, 1-7, 2005
Finding the most significant common sequence and structure motifs in a set of RNA sequences
J Gorodkin, LJ Heyer, GD Stormo
Nucleic acids research 25 (18), 3724-3732, 1997
Profiling of ribose methylations in RNA by high‐throughput sequencing
U Birkedal, M Christensen‐Dalsgaard, N Krogh, R Sabarinathan, ...
Angewandte Chemie International Edition 54 (2), 451-455, 2015
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
Displaying the in formation contents of structural RNA alignments: the structure logos
J Gorodkin, LJ Heyer, S Brunak, GD Storomo
Bioinformatics 13 (6), 583-586, 1997
Protein-driven inference of miRNA–disease associations
S Mørk, S Pletscher-Frankild, A Palleja Caro, J Gorodkin, LJ Jensen
Bioinformatics 30 (3), 392-397, 2014
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
E Torarinsson, M Sawera, JH Havgaard, M Fredholm, J Gorodkin
Genome research 16 (7), 885-889, 2006
Multiple structural alignment and clustering of RNA sequences
E Torarinsson, JH Havgaard, J Gorodkin
Bioinformatics 23 (8), 926-932, 2007
TISSUES 2.0: an integrative web resource on mammalian tissue expression
O Palasca, A Santos, C Stolte, J Gorodkin, LJ Jensen
Database 2018, bay003, 2018
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%
JH Havgaard, RB Lyngsø, GD Stormo, J Gorodkin
Bioinformatics 21 (9), 1815-1824, 2005
Protein distance constraints predicted by neural networks and probability density functions.
O Lund, K Frimand, J Gorodkin, H Bohr, J Bohr, J Hansen, S Brunak
Protein Engineering 10 (11), 1241-1248, 1997
Discovering common stem–loop motifs in unaligned RNA sequences
J Gorodkin, SL Stricklin, GD Stormo
Nucleic Acids Research 29 (10), 2135-2144, 2001
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic acids research 49 (D1), D212-D220, 2021
Transcriptomic landscape of lncRNAs in inflammatory bowel disease
AH Mirza, CHB Berthelsen, SE Seemann, X Pan, KS Frederiksen, ...
Genome medicine 7, 1-22, 2015
RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Human mutation 34 (4), 546-556, 2013
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
JH Havgaard, E Torarinsson, J Gorodkin
PLOS computational biology 3 (10), e193, 2007
RNA interactions in the 5′ region of the HIV-1 genome
CK Damgaard, ES Andersen, B Knudsen, J Gorodkin, J Kjems
Journal of molecular biology 336 (2), 369-379, 2004
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