Gabriel Berriz
Gabriel Berriz
Harvard Medical School
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Towards a proteome-scale map of the human protein–protein interaction network
JF Rual, K Venkatesan, T Hao, T Hirozane-Kishikawa, A Dricot, N Li, ...
Nature 437 (7062), 1173-1178, 2005
Global mapping of the yeast genetic interaction network
AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin, J Young, GF Berriz, ...
science 303 (5659), 808-813, 2004
A map of the interactome network of the metazoan C. elegans
S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, ...
Science 303 (5657), 540-543, 2004
Evidence for dynamically organized modularity in the yeast protein–protein interaction network
JDJ Han, N Bertin, T Hao, DS Goldberg, GF Berriz, LV Zhang, D Dupuy, ...
Nature 430 (6995), 88-93, 2004
Characterizing gene sets with FuncAssociate
GF Berriz, OD King, B Bryant, C Sander, FP Roth
Bioinformatics 19 (18), 2502-2504, 2003
Metabolomic identification of novel biomarkers of myocardial ischemia
MS Sabatine, E Liu, DA Morrow, E Heller, R McCarroll, R Wiegand, ...
Circulation 112 (25), 3868-3875, 2005
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
KC Gunsalus, H Ge, AJ Schetter, DS Goldberg, JDJ Han, T Hao, GF Berriz, ...
Nature 436 (7052), 861-865, 2005
Metabolite profiling of blood from individuals undergoing planned myocardial infarction reveals early markers of myocardial injury
GD Lewis, RU Wei, E Liu, E Yang, X Shi, M Martinovic, L Farrell, A Asnani, ...
The Journal of clinical investigation 118 (10), 3503-3512, 2008
Next generation software for functional trend analysis
GF Berriz, JE Beaver, C Cenik, M Tasan, FP Roth
Bioinformatics 25 (22), 3043-3044, 2009
A critical assessment of Mus musculusgene function prediction using integrated genomic evidence
L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ...
Genome biology 9, 1-19, 2008
Genome-wide functional analysis of human 5'untranslated region introns
C Cenik, A Derti, JC Mellor, GF Berriz, FP Roth
Genome biology 11, 1-17, 2010
Metadata standard and data exchange specifications to describe, model, and integrate complex and diverse high-throughput screening data from the library of integrated network …
UD Vempati, C Chung, C Mader, A Koleti, N Datar, D Vidović, D Wrobel, ...
Journal of biomolecular screening 19 (5), 803-816, 2014
The Synergizer service for translating gene, protein and other biological identifiers
GF Berriz, FP Roth
Bioinformatics 24 (19), 2272-2273, 2008
Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model
GF Berriz, EI Shakhnovich
Journal of molecular biology 310 (3), 673-685, 2001
GoFish finds genes with combinations of Gene Ontology attributes
GF Berriz, JV White, OD King, FP Roth
Bioinformatics 19 (6), 788-789, 2003
Cooperativity and stability in a Langevin model of proteinlike folding
GF Berriz, AM Gutin, EI Shakhnovich
The Journal of chemical physics 106 (22), 9276-9285, 1997
Erratum: Evidence for dynamically organized modularity in the yeast protein–protein interaction network
JDJ Han, N Bertin, T Hao, DS Goldberg, GF Berriz, LV Zhang, D Dupuy, ...
Nature 430 (6997), 380-380, 2004
Uma D. Vempati1, Caty Chung1, Chris Mader1, Amar Koleti1, Nakul Datar1, Dušica Vidovic, David Wrobel2, Sean Erickson2, Jeremy L. Muhlich3, Gabriel Berriz3, Cyril H. Benes4 …
D Vidovic, D Wrobel, S Erickson, JL Muhlich, G Berriz, CH Benes, ...
Journal of Biomolecular Screening 1, 14, 2014
Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and
JL Muhlich, G Berriz, CH Benes, A Subramanian, A Pillai, CE Shamu, ...
Journal of Biomolecular Screening 1, 14, 2014
Simple off-lattice models of protein folding
GF Berriz
Harvard University, 2001
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