Katerina Nastou
Katerina Nastou
Assistant Professor, Novo Nordisk Foundation Center of Protein Research, University of Copenhagen
Verified email at - Homepage
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The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic acids research 49 (D1), D605-D612, 2021
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...
Nucleic acids research 51 (D1), D638-D646, 2023
Linear B-cell epitope prediction for in silico vaccine design: A performance review of methods available via command-line interface
KA Galanis, KC Nastou, NC Papandreou, GN Petichakis, DG Pigis, ...
International journal of molecular sciences 22 (6), 3210, 2021
Cytoscape stringApp 2.0: analysis and visualization of heterogeneous biological networks
NT Doncheva, JH Morris, H Holze, R Kirsch, KC Nastou, Y Cuesta-Astroz, ...
Journal of proteome research 22 (2), 637-646, 2022
The amyloid interactome: exploring protein aggregation
KV Biza, KC Nastou, PL Tsiolaki, CV Mastrokalou, SJ Hamodrakas, ...
PloS one 12 (3), e0173163, 2017
MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models
KC Nastou, GN Tsaousis, NC Papandreou, SJ Hamodrakas
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1864 (7), 747-754, 2016
The human plasma membrane peripherome: visualization and analysis of interactions
KC Nastou, GN Tsaousis, KE Kremizas, ZI Litou, SJ Hamodrakas
BioMed research international 2014 (1), 397145, 2014
Exploring the conservation of Alzheimer-related pathways between H. sapiens and C. elegans: a network alignment approach
AE Apostolakou, XK Sula, KC Nastou, GI Nasi, VA Iconomidou
Scientific reports 11 (1), 4572, 2021
PerMemDB: A database for eukaryotic peripheral membrane proteins
KC Nastou, GN Tsaousis, VA Iconomidou
Biochimica et Biophysica Acta (BBA)-Biomembranes 1862 (2), 183076, 2020
AmyCo: the amyloidoses collection
KC Nastou, GI Nasi, PL Tsiolaki, ZI Litou, VA Iconomidou
Amyloid 26 (3), 112-117, 2019
Mining databases for protein aggregation: a review
PL Tsiolaki, KC Nastou, SJ Hamodrakas, VA Iconomidou
Amyloid 24 (3), 143-152, 2017
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data
M Koutrouli, K Nastou, P Piera Líndez, R Bouwmeester, S Rasmussen, ...
Bioinformatics 40 (2), btae010, 2024
S1000: a better taxonomic name corpus for biomedical information extraction
J Luoma, K Nastou, T Ohta, H Toivonen, E Pafilis, LJ Jensen, S Pyysalo
Bioinformatics 39 (6), btad369, 2023
Analysis of single-nucleotide polymorphisms in human voltage-gated ion channels
KC Nastou, MA Batskinis, ZI Litou, SJ Hamodrakas, VA Iconomidou
Journal of proteome research 18 (5), 2310-2320, 2019
STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature
F Mehryary, K Nastou, T Ohta, LJ Jensen, S Pyysalo
bioRxiv, 2023.12. 10.570999, 2023
Exploring amyloidogenicity of clusterin: a structural and bioinformatics analysis
PL Tsiolaki, KC Nastou, NN Louros, SJ Hamodrakas, VA Iconomidou
GeNeDis 2016: Geriatrics, 93-107, 2017
LiGIoNs: A computational method for the detection and classification of ligand-gated ion channels
AE Apostolakou, KC Nastou, GN Petichakis, ZI Litou, VA Iconomidou
Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (9), 183956, 2022
Visualization and analysis of the interaction network of proteins associated with blood-cell targeting autoimmune diseases
AI Amanatidou, KC Nastou, OE Tsitsilonis, VA Iconomidou
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1866 (5), 165714, 2020
The amyloid interactome 2: mapping protein aggregation
KC Nastou, PL Tsiolaki, VA Iconomidou
Amyloid 26 (sup1), 142-143, 2019
Lifestyle factors in the biomedical literature: comprehensive resources for named entity recognition
E Nourani, M Koutrouli, Y Xie, D Vagiaki, S Pyysalo, K Nastou, S Brunak, ...
bioRxiv, 2024.06. 13.598816, 2024
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