Patroklos Samaras
Patroklos Samaras
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Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
S Gessulat, T Schmidt, DP Zolg, P Samaras, K Schnatbaum, J Zerweck, ...
Nature methods 16 (6), 509-518, 2019
Mass-spectrometry-based draft of the Arabidopsis proteome
J Mergner, M Frejno, M List, M Papacek, X Chen, A Chaudhary, ...
Nature 579 (7799), 409-414, 2020
The emerging landscape of single-molecule protein sequencing technologies
JA Alfaro, P Bohländer, M Dai, M Filius, CJ Howard, XF Van Kooten, ...
Nature methods 18 (6), 604-617, 2021
T Schmidt, P Samaras, M Frejno, S Gessulat, M Barnert, H Kienegger, ...
Nucleic Acids Research, 2017
ProteomicsDB: a multi-omics and multi-organism resource for life science research
P Samaras, T Schmidt, M Frejno, S Gessulat, M Reinecke, A Jarzab, ...
Nucleic acids research 48 (D1), D1153-D1163, 2020
Meltome atlas—thermal proteome stability across the tree of life
A Jarzab, N Kurzawa, T Hopf, M Moerch, J Zecha, N Leijten, Y Bian, ...
Nature methods 17 (5), 495-503, 2020
Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics
M Wilhelm, DP Zolg, M Graber, S Gessulat, T Schmidt, K Schnatbaum, ...
Nature communications 12 (1), 3346, 2021
Peptide level turnover measurements enable the study of proteoform dynamics
J Zecha, C Meng, DP Zolg, P Samaras, M Wilhelm, B Kuster
Molecular & Cellular Proteomics 17 (5), 974-992, 2018
Proteome activity landscapes of tumor cell lines determine drug responses
M Frejno, C Meng, B Ruprecht, T Oellerich, S Scheich, K Kleigrewe, ...
Nature communications 11 (1), 3639, 2020
Challenges in clinical metaproteomics highlighted by the analysis of acute leukemia patients with gut colonization by multidrug-resistant enterobacteriaceae
J Rechenberger, P Samaras, A Jarzab, J Behr, M Frejno, A Djukovic, ...
Proteomes 7 (1), 2, 2019
A proteomics sample metadata representation for multiomics integration and big data analysis
C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva, J Deng, P Moreno, ...
Nature Communications 12 (1), 5854, 2021
ProteomicsDB: toward a FAIR open-source resource for life-science research
L Lautenbacher, P Samaras, J Muller, A Grafberger, M Shraideh, J Rank, ...
Nucleic Acids Research 50 (D1), D1541-D1552, 2022
Decrypting drug actions and protein modifications by dose-and time-resolved proteomics
J Zecha, FP Bayer, S Wiechmann, J Woortman, N Berner, J Müller, ...
Science 380 (6640), 93-101, 2023
Mass spectrometry-based draft of the mouse proteome
P Giansanti, P Samaras, Y Bian, C Meng, A Coluccio, M Frejno, ...
Nature methods 19 (7), 803-811, 2022
Universal spectrum explorer: a standalone (web-) application for cross-resource spectrum comparison
T Schmidt, P Samaras, V Dorfer, C Panse, T Kockmann, L Bichmann, ...
Journal of proteome research 20 (6), 3388-3394, 2021
Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis
J Mergner, M Frejno, M Messerer, D Lang, P Samaras, M Wilhelm, ...
Scientific Data 7 (1), 334, 2020
FIFS: A data mining method for informative marker selection in high dimensional population genomic data
I Kavakiotis, P Samaras, A Triantafyllidis, I Vlahavas
Computers in biology and medicine 90, 146-154, 2017
A prediction model of passenger demand using AVL and APC data from a bus fleet
P Samaras, A Fachantidis, G Tsoumakas, I Vlahavas
Proceedings of the 19th panhellenic conference on informatics, 129-134, 2015
Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors
M Reinecke, P Brear, L Vornholz, BT Berger, F Seefried, S Wilhelm, ...
Nature Chemical Biology 20 (5), 577-585, 2024
Reanalysis of ProteomicsDB using an accurate, sensitive, and scalable false discovery rate estimation approach for protein groups
P Samaras, B Kuster, M Wilhelm
Molecular & Cellular Proteomics 21 (12), 2022
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