Alistair Forrest

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Citations	30197	15136
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Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Hideya KawajiTokyo Metropolitan Institute of Medical ScienceVerified email at igakuken.or.jp
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Erik ArnerGSKVerified email at gsk.com
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Jessica SeverinRIKENVerified email at gsc.riken.jp
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen UniversityVerified email at binf.ku.dk
Robin AnderssonUniversity of CopenhagenVerified email at binf.ku.dk
Elena DenisenkoResearch Fellow, Systems Biology and Genomics, Harry Perkins Institute of Medical ResearchVerified email at perkins.uwa.edu.au
Stefano GustincichDeputy Director Life Tech Istituto Italiano di TecnologiaVerified email at iit.it
Takeya KasukawaLaboratory for Large-Scale Biomedical Data Technology, RIKEN Center for Integrative Medical SciencesVerified email at riken.jp
Nicolas BertinGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Rui HouHarry Perkins Institute of Medical Research, UWAVerified email at uwa.edu.au
Brian GabrielliMater Research Institute - The University of QueenslandVerified email at uq.edu.au
Matthew JonesHarry Perkins Institute of Medical ResearchVerified email at perkins.org.au
Professor Kate SchroderClarivate Highly Cited Researcher; Lab Head, Institute for Molecular Bioscience, University of QLDVerified email at imb.uq.edu.au

Alistair Forrest

Systems Biology and Genomics Lab, Harry Perkins Institute of Medical Research, UWA

Verified email at perkins.uwa.edu.au - Homepage

Systems Biology transcriptomics Single Cell Cell communication spatial


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The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	3960	2005
An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014	2528	2014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	2058	2002
A promoter level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL de Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014	1644*	2014
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006	1574	2006
Stem cell transcriptome profiling via massive-scale mRNA sequencing N Cloonan, ARR Forrest, G Kolle, BBA Gardiner, GJ Faulkner, MK Brown, ... Nature methods 5 (7), 613-619, 2008	1342	2008
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat C Carrieri, L Cimatti, M Biagioli, A Beugnet, S Zucchelli, S Fedele, ... Nature 491 (7424), 454-457, 2012	1033	2012
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	957	2017
The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563-571, 2009	864	2009
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci Cell 140 (5), 744-752, 2010	810	2010
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16 (1), 1-14, 2015	787	2015
A draft network of ligand-receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppman, M Lizio, ... Nature communications 6, 2015	687	2015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015	585	2015
An integrated expression atlas of miRNAs and their promoters in human and mouse D de Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature Biotechnology 35 (9), 872-878, 2017	519	2017
Tiny RNAs associated with transcription start sites in animals RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ... Nature genetics 41 (5), 572-578, 2009	427	2009
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553-562, 2009	407	2009
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition N Cloonan, MK Brown, AL Steptoe, S Wani, WL Chan, ARR Forrest, ... Genome biology 9 (8), R127, 2008	352	2008
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular Systems Biology 11 (12), 852, 2015	351	2015
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows E Denisenko, BB Guo, M Jones, R Hou, L de Kock, T Lassmann, D Poppe, ... Genome Biology 21 (1), 1-25, 2020	349	2020
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ... Nature genetics 46 (6), 558-566, 2014	300	2014

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