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Alistair Forrest
Alistair Forrest
Systems Biology and Genomics Lab, Harry Perkins Institute of Medical Research, UWA
Verified email at perkins.uwa.edu.au - Homepage
Title
Cited by
Cited by
Year
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559-1563, 2005
40812005
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
26302014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ...
Nature 420 (6915), 563-573, 2002
20782002
A promoter level mammalian expression atlas
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL de Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
1702*2014
Genome-wide analysis of mammalian promoter architecture and evolution
P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ...
Nature genetics 38 (6), 626-635, 2006
16032006
Stem cell transcriptome profiling via massive-scale mRNA sequencing
N Cloonan, ARR Forrest, G Kolle, BBA Gardiner, GJ Faulkner, MK Brown, ...
Nature methods 5 (7), 613-619, 2008
13772008
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat
C Carrieri, L Cimatti, M Biagioli, A Beugnet, S Zucchelli, S Fedele, ...
Nature 491 (7424), 454-457, 2012
10712012
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
10082017
The regulated retrotransposon transcriptome of mammalian cells
GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ...
Nature genetics 41 (5), 563-571, 2009
8922009
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16 (1), 1-14, 2015
8452015
An atlas of combinatorial transcriptional regulation in mouse and man
T Ravasi, H Suzuki, CV Cannistraci
Cell 140 (5), 744-752, 2010
8322010
A draft network of ligand-receptor-mediated multicellular signalling in human
JA Ramilowski, T Goldberg, J Harshbarger, E Kloppman, M Lizio, ...
Nature communications 6, 2015
7382015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ...
Science 347 (6225), 1010-1014, 2015
6012015
An integrated expression atlas of miRNAs and their promoters in human and mouse
D de Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature Biotechnology 35 (9), 872-878, 2017
5512017
Tiny RNAs associated with transcription start sites in animals
RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ...
Nature genetics 41 (5), 572-578, 2009
4342009
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553-562, 2009
4112009
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
E Denisenko, BB Guo, M Jones, R Hou, L de Kock, T Lassmann, D Poppe, ...
Genome Biology 21 (1), 1-25, 2020
4042020
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ...
Molecular Systems Biology 11 (12), 852, 2015
3682015
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition
N Cloonan, MK Brown, AL Steptoe, S Wani, WL Chan, ARR Forrest, ...
Genome biology 9 (8), R127, 2008
3602008
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ...
Nature genetics 46 (6), 558-566, 2014
3112014
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