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simon hubbard
simon hubbard
Professor of Computational Biology, University of Manchester
Verified email at manchester.ac.uk
Title
Cited by
Cited by
Year
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ...
Nature 432 (7018), 695-716, 2004
29912004
Naccess
SJ Hubbard, JM Thornton
Computer Program, Department of Biochemistry and Molecular Biology …, 1993
2556*1993
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Genome sequence of red jungle fowl: Washington University School of Medicine ...
Nature 432 (7018), 717-722, 2004
6332004
The structural aspects of limited proteolysis of native proteins
SJ Hubbard
Biochimica et Biophysica Acta (BBA)-Protein Structure and Molecular …, 1998
5311998
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis
D Shenton, JB Smirnova, JN Selley, K Carroll, SJ Hubbard, GD Pavitt, ...
Journal of Biological Chemistry 281 (39), 29011-29021, 2006
4882006
Molecular recognition: conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors
SJ Hubbard, SF Campbell, JM Thornton
Journal of molecular biology 220 (2), 507-530, 1991
4541991
A comprehensive collection of chicken cDNAs
PE Boardman, J Sanz-Ezquerro, IM Overton, DW Burt, E Bosch, WT Fong, ...
Current biology 12 (22), 1965-1969, 2002
3942002
A systematic approach to modeling, capturing, and disseminating proteomics experimental data
CF Taylor, NW Paton, KL Garwood, PD Kirby, DA Stead, Z Yin, ...
Nature biotechnology 21 (3), 247-254, 2003
3172003
Modeling studies of the change in conformation required for cleavage of limited proteolytic sites
SJ Hubbard, F Eisenmenger, JM Thornton
Protein Science 3 (5), 757-768, 1994
2841994
Intramolecular cavities in globular proteins
SJ Hubbard, KH Gross, P Argos
Protein Engineering, Design and Selection 7 (5), 613-626, 1994
2371994
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), M111. 014381-1-M111. 014381-10, 2012
2302012
Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics
JA Siepen, EJ Keevil, D Knight, SJ Hubbard
Journal of proteome research 6 (1), 399-408, 2007
2292007
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis
DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, ...
PLoS One 3 (6), e2300, 2008
2252008
The chicken as a model for large-scale analysis of vertebrate gene function
WRA Brown, SJ Hubbard, C Tickle, SA Wilson
Nature Reviews Genetics 4 (2), 87-98, 2003
2152003
Differential expression of ion channel transcripts in atrial muscle and sinoatrial node in rabbit
JO Tellez, H Dobrzynski, ID Greener, GM Graham, E Laing, H Honjo, ...
Circulation research 99 (12), 1384-1393, 2006
2092006
Cavities and packing at protein interfaces
SJ Hubbard, P Argos
Protein Science 3 (12), 2194-2206, 1994
1881994
BioMart Central Portal: an open database network for the biological community
JM Guberman, J Ai, O Arnaiz, J Baran, A Blake, R Baldock, C Chelala, ...
Database 2011, bar041, 2011
1812011
Conceptual modelling of genomic information
NW Paton, SA Khan, A Hayes, F Moussouni, A Brass, K Eilbeck, ...
Bioinformatics 16 (6), 548-557, 2000
1732000
CONSeQuence: prediction of reference peptides for absolute quantitative proteomics using consensus machine learning approaches
CE Eyers, C Lawless, DC Wedge, KW Lau, SJ Gaskell, SJ Hubbard
Molecular & Cellular Proteomics 10 (11), 2011
1592011
Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures.
SJ Hubbard, RJ Beynon, JM Thornton
Protein engineering 11 (5), 349-359, 1998
1531998
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