| mzML—a community standard for mass spectrometry data L Martens, M Chambers, M Sturm, D Kessner, F Levander, J Shofstahl, ... Molecular & Cellular Proteomics 10 (1), 2011 | 706 | 2011 |
| Design and implementation of microarray gene expression markup language (MAGE-ML) PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ... Genome biology 3, 1-9, 2002 | 598 | 2002 |
| Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM) GR Grant, MH Farkas, AD Pizarro, NF Lahens, J Schug, BP Brunk, ... Bioinformatics 27 (18), 2518-2528, 2011 | 411 | 2011 |
| CircaDB: a database of mammalian circadian gene expression profiles A Pizarro, K Hayer, NF Lahens, JB Hogenesch Nucleic acids research 41 (D1), D1009-D1013, 2012 | 358 | 2012 |
| The mzIdentML data standard for mass spectrometry-based proteomics results AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ... Molecular & Cellular Proteomics 11 (7), M111. 014381-1-M111. 014381-10, 2012 | 227 | 2012 |
| IVT-seq reveals extreme bias in RNA sequencing NF Lahens, IH Kavakli, R Zhang, K Hayer, MB Black, H Dueck, A Pizarro, ... Genome biology 15, 1-15, 2014 | 196 | 2014 |
| Analysis of the zebrafish proteome during embryonic development MB Lucitt, TS Price, A Pizarro, W Wu, AK Yocum, C Seiler, MA Pack, ... Molecular & Cellular Proteomics 7 (5), 981-994, 2008 | 162 | 2008 |
| GA4GH: International policies and standards for data sharing across genomic research and healthcare HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ... Cell genomics 1 (2), 2021 | 160 | 2021 |
| The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics AR Jones, M Miller, R Aebersold, R Apweiler, CA Ball, A Brazma, ... Nature Biotechnology 25 (10), 1127-1133, 2007 | 132 | 2007 |
| Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data KE Hayer, A Pizarro, NF Lahens, JB Hogenesch, GR Grant Bioinformatics 31 (24), 3938-3945, 2015 | 120 | 2015 |
| The Gene Wiki: community intelligence applied to human gene annotation JW Huss III, P Lindenbaum, M Martone, D Roberts, A Pizarro, F Valafar, ... Nucleic acids research 38 (suppl_1), D633-D639, 2010 | 100 | 2010 |
| Functional genomics of the endocrine pancreas: the pancreas clone set and PancChip, new resources for diabetes research LM Scearce, JE Brestelli, SK McWeeney, CS Lee, J Mazzarelli, DF Pinney, ... Diabetes 51 (7), 1997-2004, 2002 | 99 | 2002 |
| The post-synaptic density of human postmortem brain tissues: an experimental study paradigm for neuropsychiatric illnesses CG Hahn, A Banerjee, ML MacDonald, DS Cho, J Kamins, Z Nie, ... PloS one 4 (4), e5251, 2009 | 86 | 2009 |
| Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO‐Proteomics Standards Initiative April 23–25, 2007 … S Orchard, L Montechi‐Palazzi, EW Deutsch, PA Binz, AR Jones, N Paton, ... Proteomics 7 (19), 3436-3440, 2007 | 71 | 2007 |
| Transcriptional program of the endocrine pancreas in mice and humans KH Kaestner, CS Lee, LM Scearce, JE Brestelli, A Arsenlis, PP Le, ... Diabetes 52 (7), 1604-1610, 2003 | 68 | 2003 |
| EBP, a program for protein identification using multiple tandem mass spectrometry datasets TS Price, MB Lucitt, W Wu, DJ Austin, A Pizarro, AK Yocum, IA Blair, ... Molecular & Cellular Proteomics 6 (3), 527-536, 2007 | 67 | 2007 |
| RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies E Manduchi, GR Grant, H He, J Liu, MD Mailman, AD Pizarro, PL Whetzel, ... Bioinformatics 20 (4), 452-459, 2004 | 64 | 2004 |
| An object model and database for functional genomics A Jones, E Hunt, JM Wastling, A Pizarro, CJ Stoeckert Jr Bioinformatics 20 (10), 1583-1590, 2004 | 53 | 2004 |
| A relational schema for both array-based and SAGE gene expression experiments C Stoeckert, A Pizarro, E Manduchi, M Gibson, B Brunk, J Crabtree, ... Bioinformatics 17 (4), 300-308, 2001 | 50 | 2001 |
| FuGE: Functional genomics experiment object model AR Jones, A Pizarro, P Spellman, M Miller, FuGE Working Group OMICS: A Journal of Integrative Biology 10 (2), 179-184, 2006 | 34 | 2006 |
Christian StoeckertReseach Professor of Genetics, University of PennsylvaniaVerified email at upenn.edu
