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Chirag Nepal
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The genome sequence of Atlantic cod reveals a unique immune system
B Star, AJ Nederbragt, S Jentoft, U Grimholt, M Malmstrøm, TF Gregers, ...
Nature 477 (7363), 207-210, 2011
8392011
Two independent transcription initiation codes overlap on vertebrate core promoters
V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ...
Nature 507 (7492), 381-385, 2014
1982014
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
C Nepal, Y Hadzhiev, C Previti, V Haberle, N Li, H Takahashi, ...
Genome research 23 (11), 1938-1950, 2013
1312013
Genomic perturbations reveal distinct regulatory networks in intrahepatic cholangiocarcinoma
C Nepal, CJ O'Rourke, DVNP Oliveira, A Taranta, S Shema, P Gautam, ...
Hepatology 68 (3), 949-963, 2018
1202018
MIR21 drives resistance to heat shock protein 90 inhibition in cholangiocarcinoma
A Lampis, P Carotenuto, G Vlachogiannis, L Cascione, S Hedayat, ...
Gastroenterology 154 (4), 1066-1079. e5, 2018
1132018
Neuropsychological deficits in mice depleted of the schizophrenia susceptibility gene CSMD1
VM Steen, C Nepal, KM Ersland, R Holdhus, M Nævdal, SM Ratvik, ...
PloS one 8 (11), e79501, 2013
862013
Association of aflatoxin and gallbladder cancer
J Koshiol, YT Gao, M Dean, P Egner, C Nepal, K Jones, B Wang, ...
Gastroenterology 153 (2), 488-494. e1, 2017
792017
Neural stem cell quiescence and stemness are molecularly distinct outputs of the Notch3 signalling cascade in the vertebrate adult brain
E Than-Trong, S Ortica-Gatti, S Mella, C Nepal, A Alunni, L Bally-Cuif
Development 145 (10), dev161034, 2018
782018
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing
C Nepal, Y Hadzhiev, P Balwierz, E Tarifeño-Saldivia, R Cardenas, ...
Nature communications 11 (1), 168, 2020
432020
Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs
C Nepal, M Coolen, Y Hadzhiev, D Cussigh, P Mydel, VM Steen, ...
Nucleic acids research 44 (7), 3070-3081, 2016
432016
Integrative molecular characterisation of gallbladder cancer reveals micro-environment-associated subtypes
C Nepal, B Zhu, CJ O’Rourke, DK Bhatt, D Lee, L Song, D Wang, ...
Journal of hepatology 74 (5), 1132-1144, 2021
392021
Identification of a pan‐gamma‐secretase inhibitor response signature for notch‐driven cholangiocarcinoma
CJ O’Rourke, MS Matter, C Nepal, R Caetano‐Oliveira, PT Ton, ...
Hepatology 71 (1), 196-213, 2020
352020
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ...
Nature genetics 54 (7), 1037-1050, 2022
312022
PRI-modeler: extracting RNA structural elements from PDB files of protein–RNA complexes
K Han, C Nepal
FEBS letters 581 (9), 1881-1890, 2007
252007
RevSex duplication-induced and sex-related differences in the SOX9 regulatory region chromatin landscape in human fibroblasts
H Lybæk, D de Bruijn, AHA den Engelsman-van Dijk, D Vanichkina, ...
Epigenetics 9 (3), 416-427, 2014
222014
The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate …
S Basu, Y Hadzhiev, G Petrosino, C Nepal, J Gehrig, O Armant, M Ferg, ...
Scientific Reports 6 (1), 33210, 2016
162016
Ancestrally duplicated conserved noncoding element suggests dual regulatory roles of HOTAIR in cis and trans
C Nepal, A Taranta, Y Hadzhiev, S Pundhir, P Mydel, B Lenhard, F Müller, ...
Iscience 23 (4), 2020
102020
Alternative promoters in CpG depleted regions are prevalently associated with epigenetic misregulation of liver cancer transcriptomes
C Nepal, JB Andersen
Nature Communications 14 (1), 2712, 2023
82023
Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish
D Baranasic, M Hörtenhuber, P Balwierz, T Zehnder, AK Mukarram, ...
bioRxiv, 2021.08. 09.454869, 2021
62021
Spatial reasoning for collision detection and hardware implementation
C Nepal, SW Nam, D Kim, K Han
Intelligent Control and Automation: International Conference on Intelligent …, 2006
22006
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