Hidemasa Bono

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Yasushi OkazakiIntractable Disease Research Center, Juntendo UniversityVerified email at juntendo.ac.jp
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
Hiroyuki OgataInstitute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Takeya KasukawaLaboratory for Large-Scale Biomedical Data Technology, RIKEN Center for Integrative Medical SciencesVerified email at riken.jp
Takeru NakazatoProject Researcher, Database Center for Life ScienceVerified email at dbcls.rois.ac.jp
Hiromasa OnoHiroshima UniversityVerified email at hiroshima-u.ac.jp
Kiichi HirotaKansai Medical UniversityVerified email at hirakata.kmu.ac.jp
Yoshiyuki MatsuoKansai Medical UniversityVerified email at hirakata.kmu.ac.jp
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Yuki NaitoInstitute of Science TokyoVerified email at tmd.ac.jp
Kakeru YokoiInsect Design Technology Module, Division of Insect Advanced Technology, Institute of AgrobiologicalVerified email at affrc.go.jp
Kyoko MiuraKumamoto UniversityVerified email at kumamoto-u.ac.jp
Yoshimi KawamuraKumamoto UniversityVerified email at kumamoto-u.ac.jp
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Hideo MatsudaGraduate School of Information Science and Technology, Osaka UniversityVerified email at ist.osaka-u.ac.jp
Hideyuki OkanoKeio UniversityVerified email at keio.jp
Kumiko Ui-TeiThe University of TokyoVerified email at bs.s.u-tokyo.ac.jp
Kaori OkaKumamoto UniversityVerified email at kumamoto-u.ac.jp
Tazro OhtaInstitute for Advanced Academic Research, Chiba UniversityVerified email at chiba-u.jp

Hidemasa Bono

Graduate School of Integrated Sciences for Life, Hiroshima University

Verified email at hiroshima-u.ac.jp - Homepage

Transcriptomics Genomics Bioinformatics Database Biology Genome editing


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KEGG: Kyoto encyclopedia of genes and genomes H Ogata, S Goto, K Sato, W Fujibuchi, H Bono, M Kanehisa Nucleic acids research 27 (1), 29-34, 1999	5564	1999
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4150	2005
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	2166	2002
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites Y Naito, K Hino, H Bono, K Ui-Tei Bioinformatics 31 (7), 1120-1123, 2015	1197	2015
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16, 1-14, 2015	898	2015
Functional annotation of a full-length mouse cDNA collection General organizer Hayashizaki Y. yosihide@ gsc. riken. go. uk 1 2 44 b Nature 409 (6821), 685-690, 2001	892	2001
Integrative annotation of 21,037 human genes validated by full-length cDNA clones T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ... PLoS biology 2 (6), e162, 2004	425	2004
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays R Miki, K Kadota, H Bono, Y Mizuno, Y Tomaru, P Carninci, M Itoh, ... Proceedings of the National Academy of Sciences 98 (5), 2199-2204, 2001	275	2001
Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution Y Matsuo, S Komiya, Y Yasumizu, Y Yasuoka, K Mizushima, T Takagi, ... BMC microbiology 21, 1-13, 2021	250	2021
Organizing and computing metabolic pathway data in terms of binary relations S Goto, H Bono, H Ogata, W Fujibuchi, T Nishioka, K Sato, M Kanehisa Pac Symp Biocomput 175186, 1997	221	1997
Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia P Carninci, K Waki, T Shiraki, H Konno, K Shibata, M Itoh, K Aizawa, ... Genome research 13 (6b), 1273-1289, 2003	220	2003
Reconstruction of amino acid biosynthesis pathways from the complete genome sequence H Bono, H Ogata, S Goto, M Kanehisa Genome research 8 (3), 203-210, 1998	185	1998
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020	152	2020
Two-component response regulators from Arabidopsis thaliana contain a putative DNA-binding motif H Sakai, T Aoyama, H Bono, A Oka Plant and cell physiology 39 (11), 1232-1239, 1998	127	1998
Protein–protein interaction panel using mouse full-length cDNAs H Suzuki, Y Fukunishi, I Kagawa, R Saito, H Oda, T Endo, S Kondo, ... Genome research 11 (10), 1758-1765, 2001	126	2001
Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling I Nikaido, C Saito, Y Mizuno, M Meguro, H Bono, M Kadomura, T Kono, ... Genome Research 13 (6b), 1402-1409, 2003	125	2003
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ... Nucleic acids research, gkw995, 2016	112	2016
Tumour resistance in induced pluripotent stem cells derived from naked mole-rats S Miyawaki, Y Kawamura, Y Oiwa, A Shimizu, T Hachiya, H Bono, I Koya, ... Nature communications 7 (1), 11471, 2016	106	2016
Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive T Nakazato, T Ohta, H Bono PLoS One 8 (10), e77910, 2013	101	2013
Id4, a new candidate gene for senile osteoporosis, acts as a molecular switch promoting osteoblast differentiation Y Tokuzawa, K Yagi, Y Yamashita, Y Nakachi, I Nikaido, H Bono, ... PLoS genetics 6 (7), e1001019, 2010	97	2010

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