Pere Puigb˛
Pere Puigb˛
Department of Biology, University of Turku, Finland
Verified email at - Homepage
Cited by
Cited by
OPTIMIZER: a web server for optimizing the codon usage of DNA sequences
P Puigbo, E Guzmßn, A Romeu, S Garcia-VallvÚ
Nucleic acids research 35 (suppl_2), W126-W131, 2007
CAIcal: a combined set of tools to assess codon usage adaptation
P Puigb˛, IG Bravo, S Garcia-Vallve
Biology direct 3, 1-8, 2008
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation‐specific genes
MY Galperin, SL Mekhedov, P Puigbo, S Smirnov, YI Wolf, DJ Rigden
Environmental microbiology 14 (11), 2870-2890, 2012
Phylogenomics of prokaryotic ribosomal proteins
N Yutin, P Puigb˛, EV Koonin, YI Wolf
PloS one 7 (5), e36972, 2012
Search for a ‘Tree of Life’in the thicket of the phylogenetic forest
P Puigb˛, YI Wolf, EV Koonin
Journal of biology 8, 59, 2009
Six-week endurance exercise alters gut metagenome that is not reflected in systemic metabolism in over-weight women
E Munukka, JP Ahtiainen, P Puigbˇ, S Jalkanen, K Pahkala, A Keskitalo, ...
Frontiers in microbiology 9, 2323, 2018
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
P Puigb˛, AE Lobkovsky, DM Kristensen, YI Wolf, EV Koonin
BMC biology 12, 1-19, 2014
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
P Puigb˛, IG Bravo, S Garcia-VallvÚ
BMC bioinformatics 9, 1-7, 2008
The tree and net components of prokaryote evolution
P Puigbo, YI Wolf, EV Koonin
Genome biology and evolution 2, 745-756, 2010
Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy
SR Das, SE Hensley, A David, L Schmidt, JS Gibbs, P Puigb˛, WL Ince, ...
Proceedings of the National Academy of Sciences 108 (51), E1417-E1422, 2011
TOPD/FMTS: a new software to compare phylogenetic trees
P Puigb˛, S Garcia-VallvÚ, JO McInerney
Bioinformatics 23 (12), 1556-1558, 2007
Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain
SR Das, P Puigb˛, SE Hensley, DE Hurt, JR Bennink, JW Yewdell
PLOS pathogens 6 (11), e1001211, 2010
Classification of the glyphosate target enzyme (5-enolpyruvylshikimate-3-phosphate synthase) for assessing sensitivity of organisms to the herbicide
L Leino, T Tall, M Helander, I Saloniemi, K Saikkonen, S Ruuskanen, ...
Journal of Hazardous Materials 408, 124556, 2021
HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection
P Puigbo, A Romeu, S Garcia-Vallve
Nucleic acids research 36 (suppl_1), D524-D527, 2007
Inevitability of genetic parasites
J Iranzo, P Puigb˛, AE Lobkovsky, YI Wolf, EV Koonin
Genome biology and evolution 8 (9), 2856-2869, 2016
RCDI/eRCDI: a web-server to estimate codon usage deoptimization
P Puigb˛, L AragonŔs, S Garcia-VallvÚ
BMC research notes 3, 1-4, 2010
DendroUPGMA: a dendrogram construction utility
S Garcia-VallvÚ, P Puigbo
Universitat Rovira i Virgili, 1-14, 2009
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134
JM Gonzßlez, J Pinhassi, B Fernßndez-Gˇmez, M Coll-Lladˇ, ...
Applied and Environmental Microbiology 77 (24), 8676-8686, 2011
Ecosystem consequences of herbicides: the role of microbiome
S Ruuskanen, B Fuchs, R Nissinen, P Puigb˛, M Rainio, K Saikkonen, ...
Trends in ecology & evolution 38 (1), 35-43, 2023
Seeing the Tree of Life behind the phylogenetic forest
P Puigb˛, YI Wolf, EV Koonin
BMC biology 11, 1-3, 2013
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