Jurgen Nijkamp

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Dick de Ridderprofessor bioinformatics, Wageningen University & Research CentreVerified email at wur.nl
Marcel ReindersProfessor of Computer Science, Delft University of TechnologyVerified email at tudelft.nl
Marcel A. van den BroekDelft University of TechnologyVerified email at tudelft.nl
Jack T. PronkDelft University of TechnologyVerified email at tudelft.nl
Stefan de KokGenomaticaVerified email at genomatica.com
marijke luttikDelft University of TechnologyVerified email at tudelft.nl
Jan-Maarten Anton GeertmanHEINEKEN Supply ChainVerified email at heineken.com
Antonius J.A. (Ton) van MarisKTH Royal Institute of Technology, Stockholm, SwedenVerified email at kth.se
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
Roeland CHJ van HamKeyGene N.V. & Delft Technical UniversityVerified email at keygene.com
Pascale Daran-LapujadeFull Professor Experimental Systems Biology, Delft University of TechnologyVerified email at tudelft.nl
Víctor Guadalupe-MedinaNovozymesVerified email at biw.vib-kuleuven.be
Edward RamosResearch Associate, Emory UniversityVerified email at emory.edu
Alexey A. GritsenkoGoogle DeepMindVerified email at google.com
Wynand WinterbachScientific Software SmithVerified email at google.com
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerified email at umd.edu
Hans RoubosSenior Science Fellow Bioinformatics & ModelingVerified email at dsm.com
Liang Wudsm-firmenichVerified email at dsm-firmenich.com
Bastiaan van den Berg

Jurgen Nijkamp

HEINEKEN

Verified email at heineken.com - Homepage


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De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial … JF Nijkamp, M van den Broek, E Datema, S de Kok, L Bosman, MA Luttik, ... Microbial cell factories 11, 1-17, 2012	292	2012
De novo detection of copy number variation by co-assembly JF Nijkamp, MA van den Broek, JMA Geertman, MJT Reinders, ... Bioinformatics 28 (24), 3195-3202, 2012	110	2012
Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae B Oud, V Guadalupe-Medina, JF Nijkamp, D de Ridder, JT Pronk, ... Proceedings of the National Academy of Sciences 110 (45), E4223-E4231, 2013	108	2013
Chromosomal copy number variation in Saccharomyces pastorianus is evidence for extensive genome dynamics in industrial lager brewing strains M Van den Broek, I Bolat, JF Nijkamp, E Ramos, MAH Luttik, F Koopman, ... Applied and environmental microbiology 81 (18), 6253-6267, 2015	84	2015
Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole‐genome resequencing and … S Kok, JF Nijkamp, B Oud, FC Roque, D Ridder, JM Daran, JT Pronk, ... FEMS Yeast Research, 2012	75	2012
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies AA Gritsenko, JF Nijkamp, MJT Reinders, D Ridder Bioinformatics 28 (11), 1429-1437, 2012	73	2012
Integrating genome assemblies with MAIA J Nijkamp, W Winterbach, M Van den Broek, JM Daran, M Reinders, ... Bioinformatics 26 (18), i433-i439, 2010	57	2010
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold JF Nijkamp, M Pop, MJT Reinders, D de Ridder Bioinformatics 29 (22), 2826-2834, 2013	40	2013
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger BA Van Den Berg, JF Nijkamp, MJT Reinders, L Wu, HJ Pel, JA Roubos, ... Pattern Recognition in Bioinformatics: 5th IAPR International Conference …, 2010	5	2010
Powdery mildew resistance genes in carrot AD Haarsma, WA Zwaan, JF Nijkamp, JP Martinus, PA Dekker, ... US Patent 10,704,058, 2020		2020
Algorithms for sequence-based reverse metabolic engineering JF Nijkamp Delft University of Technology, 2013		2013
Laboratory evolution of new lactate transporter genes in a jen1¿ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and … MA van den Broek, S de Kok, JF Nijkamp, B Oud, F Roque, D de Ridder, ... 5th Conference on Physiology of Yeast and Filamentous Fungi, 2013		2013
A classifier approach to predict protein secretion in Aspergillus niger B van den Berg, J Nijkamp, M Reinders, H Pel, L Wu, J Roubos ISMB 2010, 2010		2010
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger BA Berg, JF Nijkamp, MJT Reinders, L Wu, HJ Pel, JA Roubos, D Ridder Pattern Recognition in Bioinformatics, 0

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