Richard Scheltema
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Andromeda: a peptide search engine integrated into the MaxQuant environment
J Cox, N Neuhauser, A Michalski, RA Scheltema, JV Olsen, M Mann
Journal of proteome research 10 (4), 1794-1805, 2011
The Q Exactive HF, a Benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field Orbitrap analyzer
RA Scheltema, JP Hauschild, O Lange, D Hornburg, E Denisov, E Damoc, ...
Molecular & Cellular Proteomics 13 (12), 3698-3708, 2014
PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis
RA Scheltema, A Jankevics, RC Jansen, MA Swertz, R Breitling
Analytical chemistry 83 (7), 2786-2793, 2011
System-wide molecular evidence for phenotypic buffering in Arabidopsis
J Fu, JJB Keurentjes, H Bouwmeester, T America, FWA Verstappen, ...
Nature genetics 41 (2), 166-167, 2009
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
F Liu, P Lössl, R Scheltema, R Viner, AJR Heck
Nature communications 8 (1), 15473, 2017
Time‐and compartment‐resolved proteome profiling of the extracellular niche in lung injury and repair
HB Schiller, IE Fernandez, G Burgstaller, C Schaab, RA Scheltema, ...
Molecular systems biology 11 (7), 819, 2015
Direct proteomic quantification of the secretome of activated immune cells
F Meissner, RA Scheltema, HJ Mollenkopf, M Mann
Science 340 (6131), 475-478, 2013
Efficient and robust proteome-wide approaches for cross-linking mass spectrometry
O Klykov, B Steigenberger, S Pektaş, D Fasci, AJR Heck, RA Scheltema
Nature protocols 13 (12), 2964-2990, 2018
Structural model of a CRISPR RNA-silencing complex reveals the RNA-target cleavage activity in Cmr4
C Benda, J Ebert, RA Scheltema, HB Schiller, M Baumgärtner, F Bonneau, ...
Molecular cell 56 (1), 43-54, 2014
LifeTime and improving European healthcare through cell-based interceptive medicine
N Rajewsky, G Almouzni, SA Gorski, S Aerts, I Amit, MG Bertero, C Bock, ...
Nature, 1-14, 2020
Metabolomic profiling using Orbitrap Fourier transform mass spectrometry with hydrophilic interaction chromatography: a method with wide applicability to analysis of biomolecules
A Kamleh, MP Barrett, D Wildridge, RJS Burchmore, RA Scheltema, ...
Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2008
Towards a structurally resolved human protein interaction network
DF Burke, P Bryant, I Barrio-Hernandez, D Memon, G Pozzati, A Shenoy, ...
Nature Structural & Molecular Biology 30 (2), 216-225, 2023
First community-wide, comparative cross-linking mass spectrometry study
C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, K Bernfur, ...
Analytical chemistry 91 (11), 6953-6961, 2019
Histone interaction landscapes visualized by crosslinking mass spectrometry in intact cell nuclei
D Fasci, H van Ingen, RA Scheltema, AJR Heck
Molecular & Cellular Proteomics 17 (10), 2018
Metabolomics to unveil and understand phenotypic diversity between pathogen populations
R t'Kindt, RA Scheltema, A Jankevics, K Brunker, S Rijal, JC Dujardin, ...
PLoS neglected tropical diseases 4 (11), e904, 2010
Probabilistic assignment of formulas to mass peaks in metabolomics experiments
S Rogers, RA Scheltema, M Girolami, R Breitling
Bioinformatics 25 (4), 512-518, 2009
Spacer capture and integration by a type IF Cas1–Cas2-3 CRISPR adaptation complex
RD Fagerlund, ME Wilkinson, O Klykov, A Barendregt, FG Pearce, ...
Proceedings of the National Academy of Sciences 114 (26), E5122-E5128, 2017
PhoX: an IMAC-enrichable cross-linking reagent
B Steigenberger, RJ Pieters, AJR Heck, RA Scheltema
ACS central science 5 (9), 1514-1522, 2019
Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor
S Kol, ME Merlo, RA Scheltema, M De Vries, RJ Vonk, NA Kikkert, ...
Applied and environmental microbiology 76 (8), 2574-2581, 2010
Implementation of ultraviolet photodissociation on a benchtop Q exactive mass spectrometer and its application to phosphoproteomics
KL Fort, A Dyachenko, CM Potel, E Corradini, F Marino, A Barendregt, ...
Analytical chemistry 88 (4), 2303-2310, 2016
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