Elena Denisenko
Elena Denisenko
Research Fellow, Systems Biology and Genomics, Harry Perkins Institute of Medical Research
Verified email at
Cited by
Cited by
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
E Denisenko, BB Guo, M Jones, R Hou, L De Kock, T Lassmann, D Poppe, ...
Genome biology 21, 1-25, 2020
Predicting cell-to-cell communication networks using NATMI
R Hou, E Denisenko, HT Ong, JA Ramilowski, ARR Forrest
Nature communications 11 (1), 5011, 2020
scMatch: a single-cell gene expression profile annotation tool using reference datasets
R Hou, E Denisenko, ARR Forrest
Bioinformatics 35 (22), 4688-4695, 2019
Genome-wide profiling of transcribed enhancers during macrophage activation
E Denisenko, R Guler, MM Mhlanga, H Suzuki, F Brombacher, ...
Epigenetics & chromatin 10, 1-17, 2017
Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection
E Denisenko, R Guler, M Mhlanga, H Suzuki, F Brombacher, S Schmeier
BMC genomics 20, 1-16, 2019
Intra-and intertumoral heterogeneity of liver metastases in a patient with uveal melanoma revealed by single-cell RNA sequencing
W Lin, AB Beasley, NM Ardakani, E Denisenko, L Calapre, M Jones, ...
Molecular Case Studies 7 (5), a006111, 2021
IRNdb: the database of immunologically relevant non-coding RNAs
E Denisenko, D Ho, O Tamgue, M Ozturk, H Suzuki, F Brombacher, ...
Database 2016, baw138, 2016
An evaluation of function of multicopy noncoding RNAs in mammals using ENCODE/FANTOM data and comparative genomics
MP Hoeppner, E Denisenko, PP Gardner, S Schmeier, AM Poole
Molecular Biology and Evolution 35 (6), 1451-1462, 2018
Therapeutic blockade of ER stress and inflammation prevents NASH and progression to HCC
E Boslem, S Reibe, R Carlessi, B Smeuninx, S Tegegne, CL Egan, ...
Science Advances 9 (37), eadh0831, 2023
Characterization of the humanized FRG mouse model and development of an AAV-LK03 variant with improved liver lobular biodistribution
M Cabanes-Creus, RG Navarro, SHY Liao, S Scott, R Carlessi, ...
Molecular Therapy-Methods & Clinical Development 28, 220-237, 2023
Single-nucleus RNA sequencing of pre-malignant liver reveals disease-associated hepatocyte state with HCC prognostic potential
R Carlessi, E Denisenko, E Boslem, J Köhn-Gaone, N Main, NDBA Bakar, ...
Cell Genomics 3 (5), 2023
Spatial transcriptomics reveals discrete tumour microenvironments and autocrine loops within ovarian cancer subclones
E Denisenko, L de Kock, A Tan, AB Beasley, M Beilin, ME Jones, R Hou, ...
Nature Communications 15 (1), 2860, 2024
Single-nucleus RNA sequencing reveals novel molecular signatures of healthy and chronically injured liver
R Carlessi, J Köhn-Gaone, NDA Bakar, E Denisenko, M Jones, D Poppe, ...
Journal of Gastroenteology and Hepatology 35 (S1), 25-26, 2020
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