| An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017 | 1062 | 2017 |
| Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows E Denisenko, BB Guo, M Jones, R Hou, L De Kock, T Lassmann, D Poppe, ... Genome biology 21, 1-25, 2020 | 525 | 2020 |
| Predicting cell-to-cell communication networks using NATMI R Hou, E Denisenko, HT Ong, JA Ramilowski, ARR Forrest Nature communications 11 (1), 5011, 2020 | 222 | 2020 |
| scMatch: a single-cell gene expression profile annotation tool using reference datasets R Hou, E Denisenko, ARR Forrest Bioinformatics 35 (22), 4688-4695, 2019 | 104 | 2019 |
| Spatial transcriptomics reveals discrete tumour microenvironments and autocrine loops within ovarian cancer subclones E Denisenko, L de Kock, A Tan, AB Beasley, M Beilin, ME Jones, R Hou, ... Nature Communications 15 (1), 2860, 2024 | 44* | 2024 |
| Genome-wide profiling of transcribed enhancers during macrophage activation E Denisenko, R Guler, MM Mhlanga, H Suzuki, F Brombacher, ... Epigenetics & chromatin 10, 1-17, 2017 | 30 | 2017 |
| Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection E Denisenko, R Guler, M Mhlanga, H Suzuki, F Brombacher, S Schmeier BMC genomics 20, 1-16, 2019 | 28 | 2019 |
| Intra-and intertumoral heterogeneity of liver metastases in a patient with uveal melanoma revealed by single-cell RNA sequencing W Lin, AB Beasley, NM Ardakani, E Denisenko, L Calapre, M Jones, ... Molecular Case Studies 7 (5), a006111, 2021 | 22 | 2021 |
| Therapeutic blockade of ER stress and inflammation prevents NASH and progression to HCC E Boslem, S Reibe, R Carlessi, B Smeuninx, S Tegegne, CL Egan, ... Science Advances 9 (37), eadh0831, 2023 | 16 | 2023 |
| IRNdb: the database of immunologically relevant non-coding RNAs E Denisenko, D Ho, O Tamgue, M Ozturk, H Suzuki, F Brombacher, ... Database 2016, baw138, 2016 | 16 | 2016 |
| Single-nucleus RNA sequencing of pre-malignant liver reveals disease-associated hepatocyte state with HCC prognostic potential R Carlessi, E Denisenko, E Boslem, J Köhn-Gaone, N Main, NDBA Bakar, ... Cell Genomics 3 (5), 2023 | 15 | 2023 |
| Characterization of the humanized FRG mouse model and development of an AAV-LK03 variant with improved liver lobular biodistribution M Cabanes-Creus, RG Navarro, SHY Liao, S Scott, R Carlessi, ... Molecular Therapy-Methods & Clinical Development 28, 220-237, 2023 | 13 | 2023 |
| An evaluation of function of multicopy noncoding RNAs in mammals using ENCODE/FANTOM data and comparative genomics MP Hoeppner, E Denisenko, PP Gardner, S Schmeier, AM Poole Molecular Biology and Evolution 35 (6), 1451-1462, 2018 | 11 | 2018 |
| Pericyte phenotype switching alleviates immunosuppression and sensitizes vascularized tumors to immunotherapy in preclinical models ZJ Li, B He, A Domenichini, J Satiaputra, KH Wood, DD Lakhiani, ... Journal of Clinical Investigation 134 (18), e179860, 2024 | 2 | 2024 |
| Coupling of response biomarkers between tumor and peripheral blood in patients undergoing chemoimmunotherapy WL Chin, AM Cook, J Chee, N Principe, TS Hoang, J Kidman, KPW Hmon, ... Cell Reports Medicine 6 (1), 2025 | | 2025 |
| The myeloid SRC family kinase HCK regulates breast cancer growth by activating tumor-associated macrophage-led invasion and inhibiting cytotoxic T cell activity MW Murrey, AR Poh, JH Steer, C Rinaldi, KA Mouchemore, AR Dwyer, ... | | 2024 |
| 278P Mapping human skeletal muscle enhancers to increase rates of genetic diagnosis R Taylor, J Taylor, E Denisenko, M Jones, J Clayton, N Laing, A Forrest, ... Neuromuscular Disorders 43, 104441.87, 2024 | | 2024 |
| Single-nucleus RNA sequencing reveals novel molecular signatures of healthy and chronically injured liver R Carlessi, J Köhn-Gaone, NDA Bakar, E Denisenko, M Jones, D Poppe, ... Journal of Gastroenteology and Hepatology 35 (S1), 25-26, 2020 | | 2020 |
