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Nadezhda T. Doncheva
Nadezhda T. Doncheva
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Verified email at cpr.ku.dk
Title
Cited by
Cited by
Year
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
141502019
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
68592016
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic Acids Research 49 (D1), D605-D612, 2021
51992021
Cytoscape stringApp: Network analysis and visualization of proteomics data
NT Doncheva, JH Morris, J Gorodkin, LJ Jensen
Journal of proteome research 18 (2), 623-632, 2018
14802018
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...
Nucleic Acids Research 51 (D1), D638-D646, 2023
12652023
Topological analysis and interactive visualization of biological networks and protein structures
NT Doncheva, Y Assenov, FS Domingues, M Albrecht
Nature protocols 7 (4), 670-685, 2012
5112012
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
JZ Liu, JR Hov, T Folseraas, E Ellinghaus, SM Rushbrook, NT Doncheva, ...
Nature genetics 45 (6), 670-675, 2013
4312013
Analyzing and visualizing residue networks of protein structures
NT Doncheva, K Klein, FS Domingues, M Albrecht
Trends in biochemical sciences 36 (4), 179-182, 2011
2772011
Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
D Ellinghaus, H Zhang, S Zeissig, S Lipinski, A Till, T Jiang, B Stade, ...
Gastroenterology 145 (2), 339-347, 2013
1802013
Viruses. STRING: A virus-host protein-protein interaction database
H Cook, N Doncheva, D Szklarczyk, C von Mering, L Jensen
Viruses 10 (10), 519, 2018
1262018
Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic Acids Research 49 (18), 10800, 2021
1132021
Visualize omics data on networks with Omics Visualizer, a Cytoscape App
M Legeay, NT Doncheva, JH Morris, LJ Jensen
F1000Research 9, 2020
752020
Recent approaches to the prioritization of candidate disease genes
NT Doncheva, T Kacprowski, M Albrecht
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 4 (5), 429-442, 2012
732012
Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms
OA Andreassen, RS Desikan, Y Wang, WK Thompson, AJ Schork, ...
PLoS ONE 10 (4), 2015
512015
NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules
T Kacprowski, NT Doncheva, M Albrecht
Bioinformatics 29 (11), 1471-1473, 2013
502013
Profiling of Parkin-binding partners using tandem affinity purification
A Zanon, A Rakovic, H Blankenburg, NT Doncheva, C Schwienbacher, ...
PLoS ONE 8 (11), e78648, 2013
452013
Human pathways in animal models: possibilities and limitations
NT Doncheva, O Palasca, R Yarani, T Litman, C Anthon, MAM Groenen, ...
Nucleic Acids Research 49 (4), 1859-1871, 2021
422021
Cytoscape stringApp 2.0: analysis and visualization of heterogeneous biological networks
NT Doncheva, JH Morris, H Holze, R Kirsch, KC Nastou, Y Cuesta-Astroz, ...
Journal of Proteome Research 22 (2), 637-646, 2022
332022
The STRING database in 2021: Customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets., 2021, 49, pp
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
D605-D612. DOI: https://doi. org/10.1093/nar/gkaa1074. PMID: https://www…, 0
32
Astrocytic reactivity triggered by defective autophagy and metabolic failure causes neurotoxicity in frontotemporal dementia type 3
A Chandrasekaran, KS Dittlau, GI Corsi, H Haukedal, NT Doncheva, ...
Stem cell reports 16 (11), 2736-2751, 2021
282021
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