Simone S Li
Simone S Li
NHMRC Early Career Fellow, Biomedicine Discovery Institute (Monash University, Australia)
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Durable coexistence of donor and recipient strains after fecal microbiota transplantation
SS Li, A Zhu, V Benes, PI Costea, R Hercog, F Hildebrand, ...
Science 352 (6285), 586-589, 2016
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
eLife 8, e42693, 2019
Temporal and technical variability of human gut metagenomes
AY Voigt, PI Costea, JR Kultima, SS Li, G Zeller, S Sunagawa, P Bork
Genome biology 16 (1), 73, 2015
MOCAT2: a metagenomic assembly, annotation and profiling framework
JR Kultima, LP Coelho, K Forslund, J Huerta-Cepas, SS Li, M Driessen, ...
Bioinformatics 32 (16), 2520-2523, 2016
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes
DR Mende, I Letunic, J Huerta-Cepas, SS Li, K Forslund, S Sunagawa, ...
Nucleic acids research 45 (D1), D529-D534, 2017
Drivers and determinants of strain dynamics following fecal microbiota transplantation
TSB Schmidt, SS Li, OM Maistrenko, W Akanni, LP Coelho, S Dolai, ...
Nature medicine 28 (9), 1902-1912, 2022
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
OM Maistrenko, DR Mende, M Luetge, F Hildebrand, TSB Schmidt, SS Li, ...
The ISME journal 14 (5), 1247-1259, 2020
A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis
A Ayer, S Fellermeier, C Fife, SS Li, G Smits, AJ Meyer, IW Dawes, ...
Public Library of Science 7 (9), e44278, 2012
Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity
NP Deshpande, NO Kaakoush, H Mitchell, K Janitz, MJ Raftery, SS Li, ...
PLoS One 6 (7), e22170, 2011
Bacterial resistance to CRISPR-Cas antimicrobials
RV Uribe, C Rathmer, LJ Jahn, MMH Ellabaan, SS Li, MOA Sommer
Scientific reports 11 (1), 1-9, 2021
Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance
L Ma, CNI Pang, SS Li, MR Wilkins
Journal of Proteome Research 9 (3), 1218-1225, 2010
Time-course proteome analysis reveals the dynamic response of Cryptococcus gattii cells to fluconazole
HS Chong, L Campbell, MP Padula, C Hill, E Harry, SS Li, MR Wilkins, ...
PloS one 7 (8), e42835, 2012
Four‐dimensional visualisation and analysis of protein–protein interaction networks
A Goel, SS Li, MR Wilkins
Proteomics 11 (13), 2672-2682, 2011
Visualization and analysis of the complexome network of Saccharomyces cerevisiae
SS Li, K Xu, MR Wilkins
Journal of proteome research 10 (10), 4744-4756, 2011
The Interactorium: Visualising proteins, complexes and interaction networks in a virtual 3‐D cell
YY Widjaja, CNI Pang, SS Li, MR Wilkins, TD Lambert
Proteomics 9 (23), 5309-5315, 2009
Molecular interaction networks for the analysis of human disease: Utility, limitations, and considerations
SJ Schramm, V Jayaswal, A Goel, SS Li, YH Yang, GJ Mann, MR Wilkins
Proteomics 13 (23-24), 3393-3405, 2013
Visualization of the interactome: What are we looking at?
DCY Fung, SS Li, A Goel, SH Hong, MR Wilkins
Proteomics 12 (10), 1669-1686, 2012
A Multidimensional Matrix for Systems Biology Research and Its Application to Interaction Networks
CNI Pang, A Goel, SS Li, MR Wilkins
Journal of Proteome Research 11 (11), 5204-5220, 2012
Disturbed protein–protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden
SJ Schramm, SS Li, V Jayaswal, DCY Fung, AE Campain, CNI Pang, ...
Pigment cell & melanoma research 26 (5), 708-722, 2013
Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries
FS de Oliveira Lino, S Garg, SS Li, MA Misiakou, K Kang, ...
Nature Communications 15 (1), 5323, 2024
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