| ProteomeXchange provides globally coordinated proteomics data submission and dissemination JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ... Nature biotechnology 32 (3), 223-226, 2014 | 2775 | 2014 |
| ∆ F508 CFTR interactome remodelling promotes rescue of cystic fibrosis S Pankow, C Bamberger, D Calzolari, S Martínez-Bartolomé, ... Nature 528 (7583), 510-516, 2015 | 271 | 2015 |
| Statistical model for large-scale peptide identification in databases from tandem mass spectra using SEQUEST D López-Ferrer, S Martínez-Bartolomé, M Villar, M Campillos, ... Analytical Chemistry 76 (23), 6853-6860, 2004 | 119 | 2004 |
| Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results C Fernández-Costa, S Martínez-Bartolomé, DB McClatchy, AJ Saviola, ... Journal of proteome research 19 (8), 3153-3161, 2020 | 92 | 2020 |
| Pulsed azidohomoalanine labeling in mammals (PALM) detects changes in liver-specific LKB1 knockout mice DB McClatchy, Y Ma, C Liu, BD Stein, S Martínez-Bartolomé, D Vasquez, ... Journal of proteome research 14 (11), 4815-4822, 2015 | 85 | 2015 |
| Quantitative proteomics of human fibroblasts with I1061T mutation in Niemann–Pick C1 (NPC1) protein provides insights into the disease pathogenesis N Rauniyar, K Subramanian, M Lavallée-Adam, S Martínez-Bartolomé, ... Molecular & Cellular Proteomics 14 (7), 1734-1749, 2015 | 80 | 2015 |
| Quantitative proteomics using 16O/18O labeling and linear ion trap mass spectrometry D López‐Ferrer, A Ramos‐Fernández, S Martínez‐Bartolomé, ... Proteomics 6 (S1), S4-S11, 2006 | 76 | 2006 |
| The mzIdentML data standard version 1.2, supporting advances in proteome informatics JA Vizcaíno, G Mayer, S Perkins, H Barsnes, M Vaudel, Y Perez-Riverol, ... Molecular & cellular proteomics 16 (7), 1275-1285, 2017 | 66 | 2017 |
| Amyloid accumulation drives proteome-wide alterations in mouse models of Alzheimer’s disease-like pathology JN Savas, YZ Wang, LA DeNardo, S Martinez-Bartolome, DB McClatchy, ... Cell reports 21 (9), 2614-2627, 2017 | 65 | 2017 |
| Guidelines for reporting quantitative mass spectrometry based experiments in proteomics S Martínez-Bartolomé, EW Deutsch, PA Binz, AR Jones, M Eisenacher, ... Journal of proteomics 95, 84-88, 2013 | 58 | 2013 |
| Protein footprinting via covalent protein painting reveals structural changes of the proteome in Alzheimer’s disease C Bamberger, S Pankow, S Martínez-Bartolomé, M Ma, J Diedrich, ... Journal of proteome research 20 (5), 2762-2771, 2021 | 50 | 2021 |
| Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells LC Cheng, S Baboo, C Lindsay, L Brusman, S Martinez-Bartolomé, ... Nucleus 10 (1), 126-143, 2019 | 48 | 2019 |
| The minimal information about a proteomics experiment (MIAPE) from the proteomics standards initiative S Martínez-Bartolomé, PA Binz, JP Albar Plant Proteomics: Methods and Protocols, 765-780, 2014 | 46 | 2014 |
| Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML F Ghali, R Krishna, P Lukasse, S Martínez-Bartolomé, F Reisinger, ... Molecular & Cellular Proteomics 12 (11), 3026-3035, 2013 | 38 | 2013 |
| Surfing transcriptomic landscapes. A step beyond the annotation of Chromosome 16 proteome V Segura, JA Medina-Aunon, MI Mora, S Martínez-Bartolomé, J Abian, ... Journal of proteome research 13 (1), 158-172, 2013 | 30 | 2013 |
| The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards JA Medina-Aunon, S Martínez-Bartolome, MA Lopez-García, E Salazar, ... Molecular & Cellular Proteomics 10 (10), 2011 | 28 | 2011 |
| Guidelines for reporting the use of gel image informatics in proteomics C Hoogland, M O'Gorman, P Bogard, F Gibson, M Berth, SJ Cockell, ... Nature biotechnology 28 (7), 655-656, 2010 | 25 | 2010 |
| Understanding molecular mechanisms of disease through spatial proteomics S Pankow, S Martínez-Bartolomé, C Bamberger, JR Yates Current opinion in chemical biology 48, 19-25, 2019 | 24 | 2019 |
| Deducing the presence of proteins and proteoforms in quantitative proteomics C Bamberger, S Martínez-Bartolomé, M Montgomery, S Pankow, ... Nature communications 9 (1), 2320, 2018 | 23 | 2018 |
| A standardized framing for reporting protein identifications in mzIdentML 1.2 SL Seymour, T Farrah, PA Binz, RJ Chalkley, JS Cottrell, BC Searle, ... Proteomics 14 (21-22), 2389-2399, 2014 | 23 | 2014 |
John YatesErnest W. Hahn Professor @ The Scripps Research InstituteVerified email at scripps.edu
