| Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi M Mehrshad, MM Salcher, Y Okazaki, S Nakano, K Šimek, AS Andrei, ... Microbiome 6, 1-13, 2018 | 109 | 2018 |
| Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes Y Okazaki, S Fujinaga, A Tanaka, A Kohzu, H Oyagi, S Nakano The ISME journal 11 (10), 2279-2293, 2017 | 72 | 2017 |
| Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria K Yahara, M Suzuki, A Hirabayashi, W Suda, M Hattori, Y Suzuki, ... Nature communications 12 (1), 27, 2021 | 57 | 2021 |
| A novel alphaproteobacterial ectosymbiont promotes the growth of the hydrocarbon-rich green alga Botryococcus braunii Y Tanabe, Y Okazaki, M Yoshida, H Matsuura, A Kai, T Shiratori, K Ishida, ... Scientific reports 5, 10467, 2015 | 57 | 2015 |
| Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake Y Okazaki, Y Nishimura, T Yoshida, H Ogata, S Nakano Environmental microbiology 21 (12), 4740-4754, 2019 | 55 | 2019 |
| Seasonal dominance of CL500-11 bacterioplankton (phylum Chloroflexi) in the oxygenated hypolimnion of Lake Biwa, Japan Y Okazaki, Y Hodoki, S Nakano FEMS microbiology ecology 83 (1), 82-92, 2013 | 49 | 2013 |
| Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan) Y Okazaki, SI Nakano Environmental Microbiology Reports 8 (5), 780-788, 2016 | 48 | 2016 |
| Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community S Hiraoka, Y Okazaki, M Anda, A Toyoda, S Nakano, W Iwasaki Nature communications 10 (1), 159, 2019 | 46 | 2019 |
| Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR MC Chiriac, PA Bulzu, AS Andrei, Y Okazaki, S Nakano, M Haber, ... Microbiome 10 (1), 84, 2022 | 31 | 2022 |
| Widespread dominance of kinetoplastids and unexpected presence of diplonemids in deep freshwater lakes I Mukherjee, Y Hodoki, Y Okazaki, S Fujinaga, K Ohbayashi, S Nakano Frontiers in Microbiology 10, 2375, 2019 | 23 | 2019 |
| Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing Y Okazaki, S Fujinaga, MM Salcher, C Callieri, A Tanaka, A Kohzu, ... Microbiome 9 (1), 1-15, 2021 | 21 | 2021 |
| The broad habitat spectrum of the CL500-11 lineage (phylum Chloroflexi), a dominant bacterioplankton in oxygenated hypolimnia of deep freshwater lakes Y Okazaki, MM Salcher, C Callieri, S Nakano Frontiers in microbiology 9, 2891, 2018 | 20 | 2018 |
| Long-read-resolved, ecosystem-wide exploration of nucleotide and structural microdiversity of lake bacterioplankton genomes Y Okazaki, S Nakano, A Toyoda, H Tamaki mSystems 7 (4), e00433-22, 2022 | 17 | 2022 |
| A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis H Zhao, R Zhang, J Wu, L Meng, Y Okazaki, H Hikida, H Ogata Virus Evolution 9 (2), vead064, 2023 | 11 | 2023 |
| Distributions and geochemical behaviors of oxyanion-forming trace elements and uranium in the Hövsgöl–Baikal–Yenisei water system of Mongolia and Russia A Mochizuki, T Murata, K Hosoda, T Katano, Y Tanaka, T Mimura, ... Journal of Geochemical Exploration 188, 123-136, 2018 | 10 | 2018 |
| A rapid genome‐wide analysis of isolated giant viruses using MinION sequencing H Hikida, Y Okazaki, R Zhang, TT Nguyen, H Ogata Environmental Microbiology 25 (11), 2621-2635, 2023 | 9 | 2023 |
| Facilitative interaction networks in experimental microbial community dynamics H Fujita, M Ushio, K Suzuki, MS Abe, M Yamamichi, Y Okazaki, ... Frontiers in Microbiology 14, 1153952, 2023 | 9 | 2023 |
| DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics Y Nishimura, K Yamada, Y Okazaki, H Ogata Microbes and Environments 39 (1), ME23061, 2024 | 4 | 2024 |
| Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics H Fujita, M Ushio, K Suzuki, MS Abe, M Yamamichi, Y Okazaki, ... Frontiers in Microbiology 14, 1261137, 2023 | 4 | 2023 |
| Gene transfer among viruses substantially contributes to gene gain of giant viruses J Wu, L Meng, M Gaïa, H Hikida, Y Okazaki, H Endo, H Ogata Molecular Biology and Evolution 41 (8), msae161, 2024 | 3 | 2024 |
Shin-ichi NakanoCenter for Ecological Research, Kyoto UniversityVerified email at ecology.kyoto-u.ac.jp
