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Aedin Culhane
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Year
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
44132018
Apoptosis: molecular regulation of cell death
AJ Hale, CA Smith, LC Sutherland, VEA Stoneman, VL Longthorne, ...
European Journal of Biochemistry 236 (1), 1-26, 1996
9981996
RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites
B Sobhian, G Shao, DR Lilli, AC Culhane, LA Moreau, B Xia, ...
Science 316 (5828), 1198-1202, 2007
7922007
Repeatability of published microarray gene expression analyses
JPA Ioannidis, DB Allison, CA Ball, I Coulibaly, X Cui, AC Culhane, ...
Nature genetics 41 (2), 149-155, 2009
6522009
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
IB Jeffery, DG Higgins, AC Culhane
BMC bioinformatics 7, 1-16, 2006
5232006
survcomp: an R/Bioconductor package for performance assessment and comparison of survival models
MS Schröder, AC Culhane, J Quackenbush, B Haibe-Kains
Bioinformatics 27 (22), 3206-3208, 2011
4172011
MADE4: an R package for multivariate analysis of gene expression data
AC Culhane, J Thioulouse, G Perrière, DG Higgins
Bioinformatics 21 (11), 2789-2790, 2005
4042005
Dimension reduction techniques for the integrative analysis of multi-omics data
C Meng, OA Zeleznik, GG Thallinger, B Kuster, AM Gholami, AC Culhane
Briefings in bioinformatics 17 (4), 628-641, 2016
3982016
A three-gene model to robustly identify breast cancer molecular subtypes
B Haibe-Kains, C Desmedt, S Loi, AC Culhane, G Bontempi, ...
Journal of the National Cancer Institute 104 (4), 311-325, 2012
3672012
A multivariate approach to the integration of multi-omics datasets
C Meng, B Kuster, AC Culhane, AM Gholami
BMC bioinformatics 15, 1-13, 2014
3132014
Between-group analysis of microarray data
AC Culhane, G Perriere, EC Considine, TG Cotter, DG Higgins
Bioinformatics 18 (12), 1600-1608, 2002
2762002
Analysis of differential gene expression in colorectal cancer and stroma using fluorescence-activated cell sorting purification
MJ Smith, AC Culhane, M Donovan, JC Coffey, BD Barry, MA Kelly, ...
British journal of cancer 100 (9), 1452-1464, 2009
2352009
Taxonomy of breast cancer based on normal cell phenotype predicts outcome
S Santagata, A Thakkar, A Ergonul, B Wang, T Woo, R Hu, JC Harrell, ...
The Journal of clinical investigation 124 (2), 859-870, 2014
2312014
Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples
M Riester, W Wei, L Waldron, AC Culhane, L Trippa, E Oliva, S Kim, ...
Journal of the National Cancer Institute 106 (5), dju048, 2014
2212014
Enter the matrix: factorization uncovers knowledge from omics
GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ...
Trends in Genetics 34 (10), 790-805, 2018
2162018
Reporting guidelines for human microbiome research: the STORMS checklist
C Mirzayi, A Renson, Genomic Standards Consortium, ...
Nature medicine 27 (11), 1885-1892, 2021
2012021
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis
AC Culhane, G Perrière, DG Higgins
BMC bioinformatics 4, 1-15, 2003
1932003
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments
M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ...
Nucleic acids research 40 (D1), D1077-D1081, 2012
1852012
Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue
DT Chen, A Nasir, A Culhane, C Venkataramu, W Fulp, R Rubio, T Wang, ...
Breast cancer research and treatment 119, 335-346, 2010
1792010
Safety of hydroxychloroquine, alone and in combination with azithromycin, in light of rapid wide-spread use for COVID-19: a multinational, network cohort and self-controlled …
JCE Lane, J Weaver, K Kostka, T Duarte-Salles, MTF Abrahao, H Alghoul, ...
MedRxiv, 2020
1782020
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