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Jie Zheng
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Modeling sample variables with an Experimental Factor Ontology
J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ...
Bioinformatics 26 (8), 1112-1118, 2010
6062010
The ontology for biomedical investigations
A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ...
PloS one 11 (4), e0154556, 2016
4142016
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
B Amos, C Aurrecoechea, M Barba, A Barreto, EY Basenko, R Belnap, ...
Nucleic acids research 50 (D1), D898-D911, 2022
4022022
Modeling biomedical experimental processes with OBI
RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ...
Journal of biomedical semantics 1, 1-11, 2010
3332010
EuPathDB: the eukaryotic pathogen genomics database resource
C Aurrecoechea, A Barreto, EY Basenko, J Brestelli, BP Brunk, S Cade, ...
Nucleic acids research 45 (D1), D581-D591, 2017
2232017
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ...
Database 2021, baab069, 2021
1862021
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration
E Ong, Z Xiang, B Zhao, Y Liu, Y Lin, J Zheng, C Mungall, M Courtot, ...
Nucleic acids research 45 (D1), D347-D352, 2017
1762017
CLO: the cell line ontology
S Sarntivijai, Y Lin, Z Xiang, TF Meehan, AD Diehl, UD Vempati, ...
Journal of biomedical semantics 5, 1-10, 2014
1392014
Characterization of the Drosophila Gene‐Switch system in aging studies: a cautionary tale
L Poirier, A Shane, J Zheng, L Seroude
Aging cell 7 (5), 758-770, 2008
1282008
Differential patterns of apoptosis in response to aging in Drosophila
J Zheng, SW Edelman, G Tharmarajah, DW Walker, SD Pletcher, ...
Proceedings of the National Academy of Sciences 102 (34), 12083-12088, 2005
1102005
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability
Y He, Z Xiang, J Zheng, Y Lin, JA Overton, E Ong
Journal of biomedical semantics 9, 1-10, 2018
932018
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
J Alvarez-Jarreta, B Amos, C Aurrecoechea, S Bah, M Barba, A Barreto, ...
Nucleic acids research 52 (D1), D808-D816, 2024
792024
Basic Formal Ontology 2.0: Specification and user’s guide
B Smith, M Almeida, J Bona, M Brochhausen, W Ceusters, M Courtot, ...
National Center for Ontological Research: Buffalo, NY, USA, 50, 2015
762015
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns
Z Xiang, J Zheng, Y Lin, Y He
Journal of biomedical semantics 6, 1-10, 2015
622015
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments
FS Oliveira, J Brestelli, S Cade, J Zheng, J Iodice, S Fischer, ...
Nucleic acids research 46 (D1), D684-D691, 2018
592018
Sod2 knockdown in the musculature has whole-organism consequences in Drosophila
I Martin, MA Jones, D Rhodenizer, J Zheng, JM Warrick, L Seroude, ...
Free Radical Biology and Medicine 47 (6), 803-813, 2009
522009
Standardized metadata for human pathogen/vector genomic sequences
VG Dugan, SJ Emrich, GI Giraldo-Calderón, OS Harb, RM Newman, ...
PloS one 9 (6), e99979, 2014
502014
Microbiome metadata standards: report of the national microbiome data collaborative’s workshop and follow-on activities
P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ...
Msystems 6 (1), 10.1128/msystems. 01194-20, 2021
472021
OBIB-a novel ontology for biobanking
M Brochhausen, J Zheng, D Birtwell, H Williams, AM Masci, HJ Ellis, ...
Journal of biomedical semantics 7, 1-9, 2016
442016
PACAP stimulates transcription of c-Fos and c-Jun and activates the AP-1 transcription factor in rat pancreatic carcinoma cells
H Schäfer, J Zheng, F Gundlach, R Günther, WE Schmidt
Biochemical and biophysical research communications 221 (1), 111-116, 1996
431996
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Articles 1–20