| Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19 ER Mann, M Menon, SB Knight, JE Konkel, C Jagger, TN Shaw, ... Science immunology 5 (51), eabd6197, 2020 | 228 | 2020 |
| Alterations in T and B cell function persist in convalescent COVID-19 patients HA Shuwa, TN Shaw, SB Knight, K Wemyss, FA McClure, L Pearmain, ... Med 2 (6), 720-735. e4, 2021 | 154 | 2021 |
| In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue Z Li, ZK Tuong, I Dean, C Willis, F Gaspal, R Fiancette, S Idris, B Kennedy, ... Journal of Experimental Medicine 219 (6), e20210749, 2022 | 84 | 2022 |
| A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity L Nelson, A Tighe, A Golder, S Littler, B Bakker, D Moralli, ... Nature communications 11 (1), 822, 2020 | 71 | 2020 |
| Classifying cells with Scasat, a single-cell ATAC-seq analysis tool SM Baker, C Rogerson, A Hayes, AD Sharrocks, M Rattray Nucleic acids research 47 (2), e10-e10, 2019 | 67 | 2019 |
| Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models SM Baker, K Schallau, BH Junker Journal of integrative bioinformatics 7 (3), 254-262, 2010 | 66 | 2010 |
| Reciprocal transcription factor networks govern tissue-resident ILC3 subset function and identity R Fiancette, CM Finlay, C Willis, SL Bevington, J Soley, STH Ng, ... Nature immunology 22 (10), 1245-1255, 2021 | 59 | 2021 |
| Targeting the IL33–NLRP3 axis improves therapy for experimental cerebral malaria P Strangward, MJ Haley, MG Albornoz, J Barrington, T Shaw, R Dookie, ... Proceedings of the National Academy of Sciences 115 (28), 7404-7409, 2018 | 57 | 2018 |
| Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach F Anwar, SM Baker, T Jabid, M Mehedi Hasan, M Shoyaib, H Khan, ... BMC bioinformatics 9, 1-8, 2008 | 54 | 2008 |
| ZIC3 controls the transition from naive to primed pluripotency SH Yang, M Andrabi, R Biss, SM Baker, M Iqbal, AD Sharrocks Cell Reports 27 (11), 3215-3227. e6, 2019 | 51 | 2019 |
| Murine AGM single-cell profiling identifies a continuum of hemogenic endothelium differentiation marked by ACE MZH Fadlullah, WH Neo, M Lie-A-Ling, R Thambyrajah, R Patel, R Mevel, ... Blood, The Journal of the American Society of Hematology 139 (3), 343-356, 2022 | 44 | 2022 |
| Rapid functional impairment of natural killer cells following tumor entry limits anti-tumor immunity I Dean, CYC Lee, ZK Tuong, Z Li, CA Tibbitt, C Willis, F Gaspal, ... Nature Communications 15 (1), 683, 2024 | 31 | 2024 |
| T helper 2 cells control monocyte to tissue-resident macrophage differentiation during nematode infection of the pleural cavity CM Finlay, JE Parkinson, L Zhang, BHK Chan, J Ajendra, A Chenery, ... Immunity 56 (5), 1064-1081. e10, 2023 | 31 | 2023 |
| Kidney organoids recapitulate human basement membrane assembly in health and disease MRPT Morais, P Tian, C Lawless, S Murtuza-Baker, L Hopkinson, ... Elife 11, e73486, 2022 | 31 | 2022 |
| HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation L Bridoux, P Zarrineh, J Mallen, M Phuycharoen, V Latorre, F Ladam, ... PLoS genetics 16 (12), e1009162, 2020 | 28 | 2020 |
| A unified framework for estimating parameters of kinetic biological models SM Baker, CH Poskar, F Schreiber, BH Junker BMC bioinformatics 16, 1-21, 2015 | 26 | 2015 |
| Chronic myelomonocytic leukaemia stem cell transcriptomes anticipate disease morphology and outcome DH Wiseman, SM Baker, AV Dongre, K Gurashi, JA Storer, ... EBioMedicine 58, 2020 | 25 | 2020 |
| Respectful modeling: addressing uncertainty in dynamic system models for molecular biology A Tsigkinopoulou, SM Baker, R Breitling Trends in Biotechnology 35 (6), 518-529, 2017 | 24 | 2017 |
| An improved constraint filtering technique for inferring hidden states and parameters of a biological model S Murtuza Baker, CH Poskar, F Schreiber, BH Junker Bioinformatics 29 (8), 1052-1059, 2013 | 20 | 2013 |
| Foxm1 regulates neural progenitor fate during spinal cord regeneration D Pelzer, LS Phipps, R Thuret, CJ Gallardo‐Dodd, SM Baker, K Dorey EMBO reports 22 (9), e50932, 2021 | 17 | 2021 |
Magnus RattrayUniversity of ManchesterVerified email at manchester.ac.uk
