Sarah Kummerfeld

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Vishva Dixitvice-president, GenentechVerified email at gene.com
Benjamin HaleyProfessor and BiotechnologistVerified email at umontreal.ca
Trinna L. CuellarGenentech, Inc.Verified email at gene.com
Karen O'RourkeGenentechVerified email at gene.com
Jennie LillGenentechVerified email at gene.com
Guy SalvesenProfessor, Sanford-Burnham Medical Research InstituteVerified email at sbpdiscovery.org
Juan M VaquerizasMRC Laboratory of Medical Sciences, Imperial College LondonVerified email at imperial.ac.uk
Nicholas LuscombeOkinawa Institute of Science and Technology Graduate UniversityVerified email at oist.jp
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Prof. Julian GoughMRC Laboratory of Molecular Biology, CambridgeVerified email at mrc-lmb.cam.ac.uk
Christine VogelNew York University, Center for Genomics and Systems Biology, Dept. of BiologyVerified email at nyu.edu
Kenneth R. BohelerJohns Hopkins University, Department of Biomedical EngineeringVerified email at jhmi.edu
Kevin G. BeckerStaff Scientist, National Institute on Aging, NIHVerified email at grc.nia.nih.gov
Myriam GorospeNational Institute on AgingVerified email at nih.gov
Mark P. MattsonJohns Hopkins University School of MedicineVerified email at jhmi.edu
Donald K IngramPennington Biomedical Research CenterVerified email at pbrc.edu
Takeya KasukawaLaboratory for Large-Scale Biomedical Data Technology, RIKEN Center for Integrative Medical SciencesVerified email at riken.jp
Martin FrithUniversity of Tokyo, National Institute of Advanced Industrial Science and Technology (AIST)Verified email at edu.k.u-tokyo.ac.jp
Judy KayUniversity of SydneyVerified email at sydney.edu.au
Erich Bornberg-BauerProfessor of Molecular Evolution and Bioinformatics, University of muenster, GermanyVerified email at uni-muenster.de

Sarah Kummerfeld

Chief Scientific Officer, Garvan Institute

Verified email at garvan.org.au

Computational Biology


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The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	4106	2005
Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling N Kayagaki, IB Stowe, BL Lee, K O’Rourke, K Anderson, S Warming, ... Nature 526 (7575), 666-671, 2015	3242	2015
A census of human transcription factors: function, expression and evolution JM Vaquerizas, SK Kummerfeld, SA Teichmann, NM Luscombe Nature Reviews Genetics 10 (4), 252-263, 2009	1958	2009
The genome of the social amoeba Dictyostelium discoideum L Eichinger, JA Pachebat, G Glöckner, MA Rajandream, R Sucgang, ... Nature 435 (7038), 43-57, 2005	1671	2005
Comparative genomics of trypanosomatid parasitic protozoa NM El-Sayed, PJ Myler, G Blandin, M Berriman, J Crabtree, G Aggarwal, ... Science's STKE 309 (5733), 404, 2005	1031	2005
AGEMAP: a gene expression database for aging in mice JM Zahn, S Poosala, AB Owen, DK Ingram, A Lustig, A Carter, ... PLoS genetics 3 (11), e201, 2007	482	2007
Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics G Dennis, CTJ Holweg, SK Kummerfeld, DF Choy, AF Setiadi, ... Arthritis research & therapy 16 (2), R90, 2014	379	2014
DBD––taxonomically broad transcription factor predictions: new content and functionality D Wilson, V Charoensawan, SK Kummerfeld, SA Teichmann Nucleic acids research 36 (suppl 1), D88-D92, 2008	349	2008
Molecular portraits of early rheumatoid arthritis identify clinical and treatment response phenotypes MJ Lewis, MR Barnes, K Blighe, K Goldmann, S Rana, JA Hackney, ... Cell reports 28 (9), 2455-2470. e5, 2019	312	2019
The SUPERFAMILY database in 2004: additions and improvements M Madera, C Vogel, SK Kummerfeld, C Chothia, J Gough Nucleic Acids Research 32 (suppl 1), D235-D239, 2004	293	2004
DBD: a transcription factor prediction database SK Kummerfeld, SA Teichmann Nucleic acids research 34 (suppl 1), D74-D81, 2006	285	2006
Relative rates of gene fusion and fission in multi-domain proteins SK Kummerfeld, SA Teichmann Trends in Genetics 21 (1), 25-30, 2005	217	2005
Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways DF Choy, B Modrek, AR Abbas, S Kummerfeld, HF Clark, LC Wu, ... The Journal of Immunology 186 (3), 1861-1869, 2011	195	2011
The evolution of domain arrangements in proteins and interaction networks E Bornberg-Bauer, F Beaussart, SK Kummerfeld, SA Teichmann, ... Cellular and Molecular Life Sciences CMLS 62 (4), 435-445, 2005	175	2005
IRF2 transcriptionally induces GSDMD expression for pyroptosis N Kayagaki, BL Lee, IB Stowe, OS Kornfeld, K O'Rourke, KM Mirrashidi, ... Science signaling 12 (582), eaax4917, 2019	149	2019
Discrimination of non-protein-coding transcripts from protein-coding mRNA MC Frith, TL Bailey, T Kasukawa, F Mignone, SK Kummerfeld, M Madera, ... RNA biology 3 (1), 40-48, 2006	138	2006
ASC-and caspase-8-dependent apoptotic pathway diverges from the NLRC4 inflammasome in macrophages BL Lee, KM Mirrashidi, IB Stowe, SK Kummerfeld, C Watanabe, B Haley, ... Scientific reports 8 (1), 3788, 2018	127	2018
Transcription factor Etv5 is essential for the maintenance of alveolar type II cells Z Zhang, K Newton, SK Kummerfeld, J Webster, DS Kirkpatrick, L Phu, ... Proceedings of the National Academy of Sciences 114 (15), 3903-3908, 2017	114	2017
Intrinsic apoptosis shapes the tumor spectrum linked to inactivation of the deubiquitinase BAP1 M He, MS Chaurushiya, JD Webster, S Kummerfeld, R Reja, S Chaudhuri, ... Science 364 (6437), 283-285, 2019	85	2019
Diagnostic Yield of Whole Genome Sequencing After Non-diagnostic Exome Sequencing or Gene Panel in Developmental and Epileptic Encephalopathies EE Palmer, R Sachdev, R Macintosh, GDG Counselling, US Melo, ... Neurology, 2021	83	2021

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