Jimmy K. Eng
Cited by
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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
JK Eng, AL McCormack, JR Yates
Journal of the american society for mass spectrometry 5 (11), 976-989, 1994
The innate immune response to bacterial flagellin is mediated by Toll-like receptor 5
F Hayashi, KD Smith, A Ozinsky, TR Hawn, EC Yi, DR Goodlett, JK Eng, ...
Nature 410 (6832), 1099-1103, 2001
Direct analysis of protein complexes using mass spectrometry
AJ Link, J Eng, DM Schieltz, E Carmack, GJ Mize, DR Morris, BM Garvik, ...
Nature biotechnology 17 (7), 676-682, 1999
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, ...
Science 292 (5518), 929-934, 2001
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
JR Yates, JK Eng, AL McCormack, D Schieltz
Analytical chemistry 67 (8), 1426-1436, 1995
Comet: an open‐source MS/MS sequence database search tool
JK Eng, TA Jahan, MR Hoopmann
Proteomics 13 (1), 22-24, 2013
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
DK Han, J Eng, H Zhou, R Aebersold
Nature biotechnology 19 (10), 946-951, 2001
A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
Integrated genomic and proteomic analyses of gene expression in mammalian cells
Q Tian, SB Stepaniants, M Mao, L Weng, MC Feetham, MJ Doyle, ...
Molecular & Cellular Proteomics 3 (10), 960-969, 2004
Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 …
GS Omenn, DJ States, M Adamski, TW Blackwell, R Menon, H Hermjakob, ...
Proteomics 5 (13), 3226-3245, 2005
The peptideatlas project
F Desiere, EW Deutsch, NL King, AI Nesvizhskii, P Mallick, J Eng, S Chen, ...
Nucleic acids research 34 (suppl_1), D655-D658, 2006
A guided tour of the Trans‐Proteomic Pipeline
EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ...
Proteomics 10 (6), 1150-1159, 2010
Complementary profiling of gene expression at the transcriptome and proteome levels in saccharomyces cerevisiae* S
TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng, L Hood, R Aebersold
Molecular & Cellular Proteomics 1 (4), 323-333, 2002
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
A Keller, J Eng, N Zhang, X Li, R Aebersold
Molecular systems biology 1 (1), 2005.0017, 2005
A multidimensional chromatography technology for in-depth phosphoproteome analysis
CP Albuquerque, MB Smolka, SH Payne, V Bafna, J Eng, H Zhou
Molecular & Cellular Proteomics 7 (7), 1389-1396, 2008
Development and validation of a spectral library searching method for peptide identification from MS/MS
H Lam, EW Deutsch, JS Eddes, JK Eng, N King, SE Stein, R Aebersold
Proteomics 7 (5), 655-667, 2007
iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates
D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ...
Molecular & cellular proteomics 10 (12), 2011
Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases
JR Yates, JK Eng, AL McCormack
Analytical chemistry 67 (18), 3202-3210, 1995
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis
EA Kapp, F Schütz, LM Connolly, JA Chakel, JE Meza, CA Miller, D Fenyo, ...
Proteomics 5 (13), 3475-3490, 2005
Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags
SP Gygi, B Rist, TJ Griffin, J Eng, R Aebersold
Journal of proteome research 1 (1), 47-54, 2002
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