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alka saxena
alka saxena
Genomics WA, Harry Perkins Institute for Medical Research and Telethon Kids Institute
Verified email at perkins.org.au
Title
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Cited by
Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
25282014
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
16442014
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16, 1-14, 2015
7872015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F DrablÝs, ...
Science 347 (6225), 1010-1014, 2015
5852015
Site-specific DICER and DROSHA RNA products control the DNA-damage response
S Francia, F Michelini, A Saxena, D Tang, M De Hoon, V Anelli, M Mione, ...
Nature 488 (7410), 231-235, 2012
5702012
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ...
Nature genetics 46 (6), 558-566, 2014
3012014
A predictive computational framework for direct reprogramming between human cell types
OJL Rackham, J Firas, H Fang, ME Oates, ML Holmes, AS Knaupp, ...
Nature genetics 48 (3), 331-335, 2016
2782016
Effects of cytosine methylation on transcription factor binding sites
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...
BMC genomics 15, 1-12, 2014
2762014
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, bav067, 2015
2662015
Chromatin associated RNAi components control transcriptional regulation in Drosophila
OV Cernilogar F, Onoratti MC, O’ Kothe G, Burroughs A
Nature 480 (7377), 391-395, 2011
246*2011
Long non‐coding RNA modifies chromatin: epigenetic silencing by long non‐coding RNAs
A Saxena, P Carninci
Bioessays 33 (11), 830-839, 2011
2372011
FANTOM5 CAGE profiles of human and mouse samples
S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ...
Scientific data 4 (1), 1-10, 2017
2072017
Transcriptional and functional analysis of CD1c+ human dendritic cells identifies a CD163+ subset priming CD8+ CD103+ T cells
P Bourdely, G Anselmi, K Vaivode, RN Ramos, Y Missolo-Koussou, ...
Immunity 53 (2), 335-352. e8, 2020
2062020
Redefinition of the human mast cell transcriptome by deep-CAGE sequencing
E Motakis, S Guhl, Y Ishizu, M Itoh, H Kawaji, M de Hoon, T Lassmann, ...
Blood, The Journal of the American Society of Hematology 123 (17), e58-e67, 2014
2032014
Association of microRNAs and YRNAs with platelet function
D Kaudewitz, P Skroblin, LH Bender, T Barwari, P Willeit, R Pechlaner, ...
Circulation research 118 (3), 420-432, 2016
1902016
NMDA receptor regulation prevents regression of visual cortical function in the absence of Mecp2
S Durand, A Patrizi, KB Quast, L Hachigian, R Pavlyuk, A Saxena, ...
Neuron 76 (6), 1078-1090, 2012
1782012
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
J Severin, M Lizio, J Harshbarger, H Kawaji, CO Daub, Y Hayashizaki, ...
Nature biotechnology 32 (3), 217-219, 2014
1742014
Centromere proteins Cenpa, Cenpb, and Bub3 interact with poly (ADP-ribose) polymerase-1 protein and are poly (ADP-ribosyl) ated
A Saxena, R Saffery, LH Wong, P Kalitsis, KHA Choo
Journal of Biological Chemistry 277 (30), 26921-26926, 2002
1602002
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
1312014
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
H Kawaji, M Lizio, M Itoh, M Kanamori-Katayama, A Kaiho, ...
Genome research 24 (4), 708-717, 2014
1212014
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