Thomas Sebastian B. Schmidt
Thomas Sebastian B. Schmidt
School of Medicine & APC Microbiome, University College Cork
Verified email at - Homepage
Cited by
Cited by
The human gut microbiome: from association to modulation
TSB Schmidt, J Raes, P Bork
Cell 172 (6), 1198-1215, 2018
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
elife 8, e42693, 2019
Microbial abundance, activity and population genomic profiling with mOTUs2
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
Nature communications 10 (1), 1014, 2019
Similarity of the dog and human gut microbiomes in gene content and response to diet
LP Coelho, JR Kultima, PI Costea, C Fournier, Y Pan, ...
Microbiome 6, 1-11, 2018
Disentangling the mechanisms shaping the surface ocean microbiota
R Logares, IM Deutschmann, PC Junger, CR Giner, AK Krabberřd, ...
Microbiome 8, 1-17, 2020
Pseudo-transition analysis identifies the key regulators of dynamic metabolic adaptations from steady-state data
L Gerosa, BRBH Van Rijsewijk, D Christodoulou, K Kochanowski, ...
Cell systems 1 (4), 270-282, 2015
Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem
L Maier, R Vyas, CD Cordova, H Lindsay, TSB Schmidt, S Brugiroux, ...
Cell host & microbe 14 (6), 641-651, 2013
A faecal microbiota signature with high specificity for pancreatic cancer
E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ...
Gut 71 (7), 1359-1372, 2022
Combinatorial, additive and dose-dependent drug–microbiome associations
SK Forslund, R Chakaroun, M Zimmermann-Kogadeeva, L Markó, ...
Nature 600 (7889), 500-505, 2021
Microbiome and metabolome features of the cardiometabolic disease spectrum
S Fromentin, SK Forslund, K Chechi, J Aron-Wisnewsky, R Chakaroun, ...
Nature medicine 28 (2), 303-314, 2022
GUNC: detection of chimerism and contamination in prokaryotic genomes
A Orakov, A Fullam, LP Coelho, S Khedkar, D Szklarczyk, DR Mende, ...
Genome biology 22, 1-19, 2021
Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale
TSB Schmidt, JF Matias Rodrigues, C von Mering
PLoS computational biology 10 (4), e1003594, 2014
Limits to robustness and reproducibility in the demarcation of operational taxonomic units
TSB Schmidt, JF Matias Rodrigues, C von Mering
Environmental microbiology 17 (5), 1689-1706, 2015
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis
JF Matias Rodrigues, TSB Schmidt, J Tackmann, C von Mering
Bioinformatics 33 (23), 3808-3810, 2017
Towards the biogeography of prokaryotic genes
LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ...
Nature 601 (7892), 252-256, 2022
Analyses of dryland biological soil crusts highlight lichens as an important regulator of microbial communities
S Maier, TSB Schmidt, L Zheng, T Peer, V Wagner, M Grube
Biodiversity and conservation 23 (7), 1735-1755, 2014
Drivers and determinants of strain dynamics following fecal microbiota transplantation
TSB Schmidt, SS Li, OM Maistrenko, W Akanni, LP Coelho, S Dolai, ...
Nature Medicine 28, 1902–1912, 2022
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
OM Maistrenko, DR Mende, M Luetge, F Hildebrand, TSB Schmidt, SS Li, ...
The ISME journal 14 (5), 1247-1259, 2020
Metagenomic identification of microbial signatures predicting pancreatic cancer from a multinational study
N Nagata, S Nishijima, Y Kojima, Y Hisada, K Imbe, T Miyoshi-Akiyama, ...
Gastroenterology 163 (1), 222-238, 2022
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ...
Nucleic Acids Research 48 (D1), D621-D625, 2020
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Articles 1–20