| In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes K Tominaga, D Morimoto, Y Nishimura, H Ogata, T Yoshida Frontiers in Microbiology 11, 738, 2020 | 26 | 2020 |
| Cooccurrence of broad-and narrow-host-range viruses infecting the bloom-forming toxic cyanobacterium Microcystis aeruginosa D Morimoto, K Tominaga, Y Nishimura, N Yoshida, S Kimura, Y Sako, ... Applied and environmental microbiology 85 (18), e01170-19, 2019 | 22 | 2019 |
| Calcium salts of long-chain fatty acids from linseed oil decrease methane production by altering the rumen microbiome in vitro Y Sato, K Tominaga, H Aoki, M Murayama, K Oishi, H Hirooka, T Yoshida, ... PLoS One 15 (11), e0242158, 2020 | 18 | 2020 |
| Taxonomic and functional characterization of the rumen microbiome of Japanese Black cattle revealed by 16S rRNA gene amplicon and metagenome shotgun sequencing Y Sato, H Takebe, K Tominaga, K Oishi, H Kumagai, T Yoshida, ... FEMS Microbiology Ecology 97 (12), fiab152, 2021 | 14 | 2021 |
| Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Imitervirales and prokaryotes in a coastal ecosystem F Prodinger, H Endo, Y Takano, Y Li, K Tominaga, T Isozaki, ... FEMS microbiology ecology 97 (12), fiab167, 2021 | 12* | 2021 |
| Diel cycling of the cosmopolitan abundant Pelagibacter virus 37‐F6: one of the most abundant viruses on earth F Martinez‐Hernandez, E Luo, K Tominaga, H Ogata, T Yoshida, ... Environmental Microbiology Reports 12 (2), 214-219, 2020 | 12 | 2020 |
| An Optimized Metabarcoding Method for Mimiviridae F Prodinger, H Endo, Y Gotoh, Y Li, D Morimoto, K Omae, K Tominaga, ... Microorganisms 8 (4), 506, 2020 | 11 | 2020 |
| Prevalence of viral frequency-dependent infection in coastal marine prokaryotes revealed using monthly time series virome analysis K Tominaga, N Ogawa-Haruki, Y Nishimura, H Watai, K Yamamoto, ... Msystems 8 (1), e00931-22, 2023 | 8 | 2023 |
| Systematic identification of synthetic lethal mutations with reduced-genome Escherichia coli: synthetic genetic interactions among yoaA, xthA and holC related to survival from … K Watanabe, K Tominaga, M Kitamura, J Kato Genes & genetic systems 91 (3), 183-188, 2016 | 8 | 2016 |
| Differential responses of a coastal prokaryotic community to Phytoplanktonic organic matter derived from cellular components and exudates H Takebe, K Tominaga, K Fujiwara, K Yamamoto, T Yoshida Microbes and environments 35 (3), ME20033, 2020 | 7 | 2020 |
| Assembly of Radically Recoded E. coli Genome Segments JE Norville, CL Gardner, E Aponte, CK Camplisson, A Gonzales, ... BioRxiv, 070417, 2016 | 7 | 2016 |
| Predetermined clockwork microbial worlds: Current understanding of aquatic microbial diel response from model systems to complex environments D Morimoto, S Šulčius, K Tominaga, T Yoshida Advances in Applied Microbiology 113, 163-191, 2020 | 4 | 2020 |
| Taxonomic difference in marine bloom-forming phytoplanktonic species affects the dynamics of both bloom-responding prokaryotes and prokaryotic viruses H Takebe, K Tominaga, T Isozaki, T Watanabe, K Yamamoto, ... Msystems 9 (4), e00949-23, 2024 | 2 | 2024 |
| A rumen virosphere with implications of contribution to fermentation and methane production, and endemism in cattle breeds and individuals Y Sato, H Takebe, K Tominaga, J Yasuda, H Kumagai, H Hirooka, ... Applied and Environmental Microbiology 90 (1), e01581-23, 2024 | 2* | 2024 |
| Virus–prokaryote infection pairs associated with prokaryotic production in a freshwater lake S Shen, K Tominaga, K Tsuchiya, T Matsuda, T Yoshida, Y Shimizu Msystems 9 (2), e00906-23, 2024 | 1 | 2024 |
| Population‐level prokaryotic community structures associated with ferromanganese nodules in the Clarion‐Clipperton Zone (Pacific Ocean) revealed by 16S rRNA gene amplicon … K Tominaga, H Takebe, C Murakami, A Tsune, T Okamura, T Ikegami, ... Environmental Microbiology Reports 16 (1), e13224, 2024 | 1 | 2024 |
| Viral nature of the aquatic ecosystems D Morimoto, K Tominaga, H Takebe, S Šulčius, T Yoshida The Biological Role of a Virus, 3-25, 2022 | 1 | 2022 |
| Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae K Tominaga, S Ozaki, S Sato, T Katayama, Y Nishimura, K Omae, ... Proceedings of the National Academy of Sciences 121 (19), e2317954121, 2024 | | 2024 |
| Cyanobacteria And Their Phages Revealed Through Metagenomic Analysis In A Freshwater Lake S Shen, K Tominaga, K Tsuchiya, T Matsuda, T Yoshida, Y Shimizu International Conference of Recent Trends in Environmental Science and …, 2022 | | 2022 |
| Molecular ecological studies on the effect of viral infection on abundant marine prokaryotes K Tominaga Kyoto University, 2021 | | 2021 |
Takashi YoshidaKyoto UniversityVerified email at kais.kyoto-u.ac.jp
