Ziv Bar-Joseph
Ziv Bar-Joseph
Professor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon University
Verified email at - Homepage
Cited by
Cited by
Transcriptional regulatory networks in Saccharomyces cerevisiae
TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, ...
science 298 (5594), 799-804, 2002
The magazine archive includes every article published in Communications of the ACM for over the past 50 years.
M Marathe, AKS Vullikanti
Communications of the ACM 56 (7), 88-96, 0
STEM: a tool for the analysis of short time series gene expression data
J Ernst, Z Bar-Joseph
BMC bioinformatics 7 (1), 1, 2006
The sirtuin SIRT6 regulates lifespan in male mice
Y Kanfi, S Naiman, G Amir, V Peshti, G Zinman, L Nahum, Z Bar-Joseph, ...
Nature 483 (7388), 218-221, 2012
Computational discovery of gene modules and regulatory networks
Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, ...
Nature biotechnology 21 (11), 1337-1342, 2003
Analyzing time series gene expression data
Z Bar-Joseph
Bioinformatics 20 (16), 2493-2503, 2004
Fast optimal leaf ordering for hierarchical clustering
Z Bar-Joseph, DK Gifford, TS Jaakkola
Bioinformatics 17 (suppl 1), S22-S29, 2001
Clustering short time series gene expression data
J Ernst, GJ Nau, Z Bar-Joseph
Bioinformatics 21 (suppl 1), i159-i168, 2005
Studying and modelling dynamic biological processes using time-series gene expression data
Z Bar-Joseph, A Gitter, I Simon
Nature Reviews Genetics 13 (8), 552-564, 2012
Evaluation of different biological data and computational classification methods for use in protein interaction prediction
Y Qi, Z Bar‐Joseph, J Klein‐Seetharaman
Proteins: Structure, Function, and Bioinformatics 63 (3), 490-500, 2006
A transcription factor hierarchy defines an environmental stress response network
L Song, SC Huang, A Wise, R Castanon, JR Nery, H Chen, M Watanabe, ...
Science 354 (6312), aag1550, 2016
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
QK Beg, A Vazquez, J Ernst, MA de Menezes, Z Bar-Joseph, AL Barabási, ...
Proceedings of the National Academy of Sciences 104 (31), 12663-12668, 2007
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
KN Chang, S Zhong, MT Weirauch, G Hon, M Pelizzola, H Li, SC Huang, ...
Elife 2, e00675, 2013
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
PMRC M.P. Snyder, S. Lin, A. Posgai, M. Atkinson, R. Satija, N. Gehlenborg ...
Nature 574, 187-192, 2019
Continuous representations of time-series gene expression data
Z Bar-Joseph, GK Gerber, DK Gifford, TS Jaakkola, I Simon
Journal of Computational Biology 10 (3-4), 341-356, 2003
Texture mixing and texture movie synthesis using statistical learning
Z Bar-Joseph, R El-Yaniv, D Lischinski, M Werman
IEEE Transactions on visualization and computer graphics 7 (2), 120-135, 2001
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ...
Genome biology 9 (1), 1, 2008
A new approach to analyzing gene expression time series data
Z Bar-Joseph, G Gerber, DK Gifford, TS Jaakkola, I Simon
Proceedings of the sixth annual international conference on Computational …, 2002
Random forest similarity for protein-protein interaction prediction from multiple sources.
Y Qi, J Klein-Seetharaman, Z Bar-Joseph
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 531-542, 2004
Future directions in idiopathic pulmonary fibrosis research. An NHLBI workshop report
TS Blackwell, AM Tager, Z Borok, BB Moore, DA Schwartz, KJ Anstrom, ...
American journal of respiratory and critical care medicine 189 (2), 214-222, 2014
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