Alexander Junge
Alexander Junge
Co-Founder & CTO amass technologies. Formerly Head of Machine Learning PhD Bioinformatics
Verified email at - Homepage
Cited by
Cited by
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475, 2018
Bioconda: A sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
bioRxiv, 207092, 2017
Transcriptome and Metabolite Changes during Hydrogen Cyanamide-Induced Floral Bud Break in Sweet Cherry
IA Ionescu, G López-Ortega, M Burow, A Bayo-Canha, A Junge, ...
Frontiers in plant science 8, 1233, 2017
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape
N Alcaraz, J Pauling, R Batra, E Barbosa, A Junge, AGL Christensen, ...
BMC Systems Biology 8 (1), 99, 2014
RAIN: RNA–protein Association and Interaction Networks
A Junge, JC Refsgaard, C Garde, X Pan, A Santos, F Alkan, C Anthon, ...
Database 2017 (1), 2017
Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration
D Grissa, A Junge, TI Oprea, LJ Jensen
Database 2022, baac019, 2022
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs
M Miladi, A Junge, F Costa, SE Seemann, J Hull Havgaard, J Gorodkin, ...
Bioinformatics, 2017
Automated Medical Coding on MIMIC-III and MIMIC-IV: A Critical Review and Replicability Study
J Edin, A Junge, JD Havtorn, L Borgholt, M Maistro, T Ruotsalo, L Maaløe
arXiv preprint arXiv:2304.10909, 2023
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision
A Junge, LJ Jensen
Bioinformatics 36 (1), 264-271, 2020
Highlights from the tenth ISCB Student Council Symposium 2014
F Rahman, K Wilkins, A Jacobsen, A Junge, E Vicedo, D DeBlasio, ...
BMC Bioinformatics 16 (Suppl 2), A1, 2015
On the hunt for the alternate host of Hemileia vastatrix
A Koutouleas, H Jørgen Lyngs Jørgensen, B Jensen, JPB Lillesø, ...
Ecology and evolution 9 (23), 13619-13631, 2019
Assessing the miRNA sponge potential of RUNX1T1 in t (8; 21) acute myeloid leukemia
A Junge, R Zandi, JH Havgaard, J Gorodkin, JB Cowland
Gene 615, 35-40, 2017
Highlights from the 11th ISCB Student Council Symposium 2015
K Wilkins, M Hassan, M Francescatto, J Jespersen, RG Parra, B Cuypers, ...
BMC Bioinformatics 17 (3), 203, 2016
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
Pig chromosome X long non-coding RNA annotation and expression
S Djebali, O Palasca, C Anton, T Derrien, O Madsen, M Thomas, E Floden, ...
PAG XXV-Plant and Animal Genome Conference, 2017
A Study of Pig Chromosome X lncRNA Expression
S Djebali, O Palasca, C Anthon, T Derrien, O Madsen, M Thomas, ...
The Plant and Animal Genome XXIIV Conference (PAG), 2017
Integration and visualization of non-coding RNA and protein interaction networks
A Junge, JC Refsgaard, C Garde, X Pan, AS Delgado, C Anthon, F Alkan, ...
First Annual Danish Bioinformatics Conference, 2015
RNAalignClust: Discovering ncRNA families by sequence-structure-based clustering of multiple sequence alignments
M Miladi, A Junge
Intergrative RNA Biology Special Interest Group Meeting, 22, 2014
KeyPathwayMiner-Combining OMICS data and biological networks
J Pauling, N Alcaraz, A Junge, J Baumbach
GCB 2012 Highlight Abstracts, 19, 2012
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