Lidija Berke
Lidija Berke
Genetwister Technologies
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DOWNY MILDEW RESISTANT 6 and DMR 6‐LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis
T Zeilmaker, NR Ludwig, J Elberse, MF Seidl, L Berke, A Van Doorn, ...
The Plant Journal 81 (2), 210-222, 2015
The alternative reality of plant mitochondrial DNA: One ring does not rule them all
A Kozik, BA Rowan, D Lavelle, L Berke, ME Schranz, RW Michelmore, ...
PLoS genetics 15 (8), e1008373, 2019
The PLETHORA gene regulatory network guides growth and cell differentiation in Arabidopsis roots
L Santuari, GF Sanchez-Perez, M Luijten, B Rutjens, I Terpstra, L Berke, ...
The Plant Cell 28 (12), 2937-2951, 2016
Metabolism control over growth: a case for trehalose-6-phosphate in plants
H Schluepmann, L Berke, GF Sanchez-Perez
Journal of experimental botany 63 (9), 3379-3390, 2012
Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies a SNX1 phosphorylation site required for growth
H Zhang, H Zhou, L Berke, AJR Heck, S Mohammed, B Scheres, ...
Mol Cell Proteomics, 2013
Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set
CA ten Hove, Z Bochdanovits, VMA Jansweijer, FG Koning, L Berke, ...
Plant molecular biology, 1-15, 2011
Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants
SC Mithoe, PJ Boersema, L Berke, B Snel, AJR Heck, FLH Menke
Journal of Proteome Research 11 (1), 438–448, 2012
The plant Polycomb repressive complex 1 (PRC1) existed in the ancestor of seed plants and has a complex duplication history
L Berke, B Snel
BMC evolutionary biology 15 (1), 1-10, 2015
The Huperzia selago Shoot Tip Transcriptome Sheds New Light on the Evolution of Leaves
AI Evkaikina, L Berke, MA Romanova, E Proux-Wéra, AN Ivanova, ...
Genome Biology and Evolution 9 (9), 2444-2460, 2017
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool
EM Jonkheer, B Brankovics, IM Houwers, JM van der Wolf, PJM Bonants, ...
BMC genomics 22 (1), 1-18, 2021
Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis
L Berke, GF Sanchez-Perez, B Snel
Genome Biology 13 (10), R94, 2012
The Histone Modification H3K27me3 Is Retained after Gene Duplication and Correlates with Conserved Noncoding Sequences in Arabidopsis
L Berke, B Snel
Genome biology and evolution 6 (3), 572-579, 2014
PanTools v3: functional annotation, classification and phylogenomics
EM Jonkheer, DJM van Workum, S Sheikhizadeh Anari, B Brankovics, ...
Bioinformatics 38 (18), 4403-4405, 2022
What can the phylogeny of class I KNOX genes and their expression patterns in land plants tell us about the evolution of shoot development?
AI Maksimova, L Berke, MG Salgado, EA Klimova, K Pawlowski, ...
Botanical Journal of the Linnean Society 195 (3), 254-280, 2021
Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome …
W Xiong, J Risse, L Berke, T Zhao, H Van De Geest, C Oplaat, ...
Frontiers in Plant Science 14, 1198909, 2023
The genome of Lactuca saligna, a wild relative of lettuce, provides insight into non-host resistance to the downy
W Xiong, L Berke, R Michelmore, DJM van Workum, FFM Becker, ...
Fusarium oxysporum effector clustering version 2: An updated pipeline to infer host range
MA Brenes Guallar, L Fokkens, M Rep, L Berke, P van Dam
Frontiers in Plant Science 13, 1012688, 2022
Hop EST resources for marker development
B Javornik, L Berke, Z Luthar, J Jakše, A Čerenak, JM Jeltsch, A Forster, ...
II International Humulus Symposium 848, 65-72, 2008
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding
W Xiong, DJM van Workum, L Berke, LV Bakker, E Schijlen, FFM Becker, ...
G3: Genes, Genomes, Genetics 13 (11), jkad204, 2023
Fusarium oxysporum Effector Clustering version 2 (FoEC2): an updated pipeline to infer host range
MA Brenes Guallar, L Fokkens, M Rep, L Berke, P van Dam
bioRxiv, 2022.08. 08.503139, 2022
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