Gipsi Lima Mendez
Gipsi Lima Mendez
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Cited by
Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 1261359, 2015
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 1261605, 2015
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 1262073, 2015
A holistic approach to marine eco-systems biology
E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ...
PLoS biology 9 (10), e1001177, 2011
Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
R Logares, S Sunagawa, G Salazar, FM Cornejo‐Castillo, I Ferrera, ...
Environmental microbiology 16 (9), 2659-2671, 2014
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ...
Nature microbiology 1 (8), 1-8, 2016
A global ocean atlas of eukaryotic genes
Q Carradec, E Pelletier, C Da Silva, A Alberti, Y Seeleuthner, ...
Nature communications 9 (1), 373, 2018
ACLAME: a CLAssification of Mobile genetic Elements, update 2010
R Leplae, G Lima-Mendez, A Toussaint
Nucleic acids research 38 (suppl_1), D57-D61, 2010
Reticulate representation of evolutionary and functional relationships between phage genomes
G Lima-Mendez, J Van Helden, A Toussaint, R Leplae
Molecular biology and evolution 25 (4), 762-777, 2008
The powerful law of the power law and other myths in network biology
G Lima-Mendez, J Van Helden
Molecular BioSystems 5 (12), 1482-1493, 2009
Prophinder: a computational tool for prophage prediction in prokaryotic genomes
G Lima-Mendez, J Van Helden, A Toussaint, R Leplae
Bioinformatics 24 (6), 863-865, 2008
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
P Hingamp, N Grimsley, SG Acinas, C Clerissi, L Subirana, J Poulain, ...
The ISME journal 7 (9), 1678-1695, 2013
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ...
Gut 68 (7), 1180-1189, 2019
Cross-biome comparison of microbial association networks
K Faust, G Lima-Mendez, JS Lerat, JF Sathirapongsasuti, R Knight, ...
Frontiers in microbiology 6, 1200, 2015
Tara Oceans coordinators
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
SG Acinas, P Sánchez, G Salazar, FM Cornejo-Castillo, M Sebastián, ...
Communications biology 4 (1), 604, 2021
Network Analysis Tools: from biological networks to clusters and pathways
S Brohée, K Faust, G Lima-Mendez, G Vanderstocken, J Van Helden
Nature protocols 3 (10), 1616-1629, 2008
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
S Brohee, K Faust, G Lima-Mendez, O Sand, R Janky, G Vanderstocken, ...
Nucleic acids research 36 (suppl_2), W444-W451, 2008
Community‐level responses to iron availability in open ocean plankton ecosystems
L Caputi, Q Carradec, D Eveillard, A Kirilovsky, E Pelletier, ...
Global Biogeochemical Cycles 33 (3), 391-419, 2019
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