Gary Bader

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Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Charles BooneProfessor, Donnelly Centre, University of TorontoVerified email at utoronto.ca
Max FranzUniversity of TorontoVerified email at utoronto.ca
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Jüri ReimandAssociate professor, Ontario Institute for Cancer Research, University of TorontoVerified email at utoronto.ca
Chris SanderHarvard Medical School, Broad Institute, MGH, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Daniele MericoVevo Tx / TCAG (SickKids)Verified email at vevo.ai
John E. DickUniversity of TorontoVerified email at uhnresearch.ca
Brenda AndrewsDirector, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Jeff LiuUniversity Health NetworkVerified email at utoronto.ca
Brendan T InnesUniversity of TorontoVerified email at mail.utoronto.ca
Emek DemirOHSUVerified email at ohsu.edu
Sonya MacParlandToronto General Research Institute, University of TorontoVerified email at utoronto.ca
John H MorrisUCSFVerified email at cgl.ucsf.edu
Bo WangChief AI Scientist,UHN; CIFAR AI Chair, Vector Institute; Assistant Professor, U of TorontoVerified email at vectorinstitute.ai
Mike TyersThe Hospital for Sick ChildrenVerified email at sickkids.ca
Amy TongUniversity of TorontoVerified email at utoronto.ca
John GiorgiPh.D. Computer Science Candidate, University of TorontoVerified email at utoronto.ca
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Igor RodchenkovUniversity of TorontoVerified email at utoronto.ca

Gary Bader

Professor of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto

Verified email at utoronto.ca - Homepage

Computational Biology Systems Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An automated method for finding molecular complexes in large protein interaction networks GD Bader, CWV Hogue BMC bioinformatics 4, 1-27, 2003	6312	2003
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, ... Nature 415 (6868), 180-183, 2002	4648	2002
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function D Warde-Farley, SL Donaldson, O Comes, K Zuberi, R Badrawi, P Chao, ... Nucleic acids research 38 (suppl_2), W214-W220, 2010	4481	2010
Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2833	2007
Systematic genetic analysis with ordered arrays of yeast deletion mutants AHY Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, ... Science 294 (5550), 2364-2368, 2001	2641	2001
A draft map of the human proteome MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ... Nature 509 (7502), 575-581, 2014	2587	2014
Global mapping of the yeast genetic interaction network AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin, J Young, GF Berriz, ... science 303 (5659), 808-813, 2004	2568	2004
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	2563*	2020
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010	2543	2010
Functional impact of global rare copy number variation in autism spectrum disorders D Pinto, AT Pagnamenta, L Klei, R Anney, D Merico, R Regan, J Conroy, ... Nature 466 (7304), 368-372, 2010	2419	2010
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation D Merico, R Isserlin, O Stueker, A Emili, GD Bader PloS one 5 (11), e13984, 2010	2355	2010
Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap Nature Protocols 14, 482–517, 2019	1730	2019
The reactome pathway knowledgebase 2022 M Gillespie, B Jassal, R Stephan, M Milacic, K Rothfels, A Senff-Ribeiro, ... Nucleic acids research 50 (D1), D687-D692, 2022	1645	2022
BIND: the biomolecular interaction network database GD Bader, D Betel, CWV Hogue Nucleic acids research 31 (1), 248-250, 2003	1592	2003
A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012	1589	2012
Association analysis identifies 65 new breast cancer risk loci K Michailidou, S Lindström, J Dennis, J Beesley, S Hui, S Kar, A Lemaçon, ... Nature 551 (7678), 92-94, 2017	1510	2017
Pathway Commons, a web resource for biological pathway data EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ... Nucleic acids research 39 (suppl_1), D685-D690, 2010	1320	2010
Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations SA MacParland, JC Liu, XZ Ma, BT Innes, AM Bartczak, BK Gage, ... Nature communications 9 (1), 4383, 2018	1287	2018
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer cell 27 (5), 728-743, 2015	1198	2015
Intertumoral heterogeneity within medulloblastoma subgroups FMG Cavalli, M Remke, L Rampasek, J Peacock, DJH Shih, B Luu, ... Cancer cell 31 (6), 737-754. e6, 2017	1181	2017

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